View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_5 (Length: 570)
Name: NF6722_low_5
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 13 - 553
Target Start/End: Original strand, 42984720 - 42985260
Alignment:
| Q |
13 |
acatcagcatttgcttttttagcttcacaaaatcacagggccgacgtgattttgttaaactcaccattgatctaaacatgcaagatattttacttttctt |
112 |
Q |
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| T |
42984720 |
acatcagcatttgcttttttagcttcacaaaatcacagggccgccgtgattttgttaaactcaccattgatctaaacatgcaagatattttacttttctt |
42984819 |
T |
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| Q |
113 |
acaaaatatgtggttggagcaaatacaaatcccccaaaaaagctgagaagcccaccaaagaaaggaaatgtaattgcaaggaccatggtaattgctgcat |
212 |
Q |
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| T |
42984820 |
acaaaatatgtggttggagcaaatacaaatcccccaaaaaagctgagaagcccaccaaagaaaggaaatgtaattgcaaggaccatggtaattgctgcat |
42984919 |
T |
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| Q |
213 |
ataagtaattgttaaattaaaattctctatgtaaatgaaatttagtgcatgaaatggaaacttcaacctctaaaagagaagggaaagcaaactaacaaac |
312 |
Q |
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| T |
42984920 |
ataagaaattgttaaattaaaattctctatgtaaatgaaatttagtgcatgaaatggaaacttcaacctctaaaagagaagggaaagcaaactaacaaac |
42985019 |
T |
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| Q |
313 |
atataaatttcgaattgcgaatcggagaaaccgagatggcttgaaattcatcttctctgctagaaatgattctaatatatgaaacaccgggacggcatag |
412 |
Q |
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| T |
42985020 |
atataaatttcgaattgcgaatcgaagaaaccgagatggcttgaaattcatcttctctgctagaaatgattctaacatatgaaacaccgggacggcatag |
42985119 |
T |
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| Q |
413 |
acctaacaagaaaattaattaaacgtaaataaacaagtccaaattatctttcaatgcacgcaagtgcagacatgtacgcacaatgaaatatagcaaattt |
512 |
Q |
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| T |
42985120 |
acctaacaagaaaattaattaaacttaaataaacaaatccaaattatctttcaatgcacgcaagtgcagacatgtacgcacaataaaatatagcaaattt |
42985219 |
T |
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| Q |
513 |
cgtcaccgggatcatcagacactagtaaataatcctagttg |
553 |
Q |
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| T |
42985220 |
tgtcaccgggatcatcagacactagtaaataatcctagttg |
42985260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 10810952 - 10810894
Alignment:
| Q |
33 |
agcttcacaaaatcacagggccgacgtgattttgttaaactcaccattgatctaaacat |
91 |
Q |
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| T |
10810952 |
agcttcacaaaatcacaatgccatcgtgattttgctaaactcaccgttaatctaaacat |
10810894 |
T |
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