View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_8 (Length: 509)
Name: NF6722_low_8
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 23 - 508
Target Start/End: Complemental strand, 35410318 - 35409834
Alignment:
| Q |
23 |
gagatactgtatgcaaattacgtgtgctgcctataaagattggtggcgatttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatag |
122 |
Q |
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| T |
35410318 |
gagatactgtatgcaaattacgtgtgctgcctataaagattggtggcggtttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatag |
35410219 |
T |
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| Q |
123 |
tttccttcatcaaagttttctgtgcaatgagcttggttttacttgttctttcatttgttctttcactaagtgaagaagataagatctaactatttattct |
222 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410218 |
tttccttcatcaaagttttctgctcaatgagcttggttttacttgttctttcatttgttctttcactaagtgaagaagataagatctaactatttattct |
35410119 |
T |
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| Q |
223 |
ttcnnnnnnnncagaggtttggcggttccagatgccactcagccacatggcattagactacttattgaagattatccttatgcggctgatggactcctca |
322 |
Q |
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| T |
35410118 |
ttcttttttt-cagaggtttggcggttccagatgccactcggccacatggcattagactacttattgaagattatccttatgcggctgatggactcctca |
35410020 |
T |
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| Q |
323 |
tatggactagtatagagaagttggtcaggacctatgtgaaccattactacaaagatttgaatgccgtttcttctgacaatgaactccagtcctggtacaa |
422 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35410019 |
tatggtctagtatagagaagttggtcaggacctatgtgaaccattactacaaagatttgaatgccatttcttctgacaatgaactccagtcctggtacaa |
35409920 |
T |
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| Q |
423 |
agaattcatcaacatagggcaccctgatcataaaaatgctacctggtggcctaaactaaacacccctgaggatctcatctccttgc |
508 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409919 |
agaattcatcaacatggggcaccctgatcataaaaatgctacctggtggcctaaactaaacacccctgaggatctcatctccttgc |
35409834 |
T |
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