View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6722_low_9 (Length: 498)

Name: NF6722_low_9
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6722_low_9
NF6722_low_9
[»] chr5 (5 HSPs)
chr5 (1-476)||(38921135-38921612)
chr5 (169-319)||(39017179-39017329)
chr5 (319-476)||(35968600-35968757)
chr5 (320-446)||(16727813-16727939)
chr5 (322-424)||(35967351-35967453)
[»] chr4 (6 HSPs)
chr4 (319-476)||(30829927-30830084)
chr4 (319-453)||(52190296-52190430)
chr4 (319-446)||(52189186-52189313)
chr4 (1-133)||(42237177-42237307)
chr4 (410-454)||(31409401-31409445)
chr4 (322-444)||(8480884-8481006)
[»] chr7 (6 HSPs)
chr7 (319-476)||(41739622-41739779)
chr7 (321-400)||(42537718-42537797)
chr7 (319-400)||(45291933-45292014)
chr7 (319-400)||(38516620-38516701)
chr7 (319-400)||(45296058-45296139)
chr7 (311-387)||(40601815-40601891)
[»] chr1 (6 HSPs)
chr1 (319-476)||(35063526-35063683)
chr1 (319-446)||(26529508-26529635)
chr1 (319-446)||(36573962-36574089)
chr1 (318-405)||(49919676-49919763)
chr1 (354-423)||(35062599-35062668)
chr1 (319-423)||(36575494-36575598)
[»] chr8 (8 HSPs)
chr8 (316-444)||(17863463-17863591)
chr8 (319-453)||(17864642-17864776)
chr8 (319-442)||(3870768-3870891)
chr8 (314-446)||(32565568-32565700)
chr8 (320-442)||(3872224-3872346)
chr8 (317-350)||(5014854-5014887)
chr8 (319-400)||(37241028-37241109)
chr8 (322-350)||(32564510-32564538)
[»] chr3 (9 HSPs)
chr3 (318-457)||(9099559-9099698)
chr3 (319-400)||(37464968-37465049)
chr3 (319-443)||(20997633-20997757)
chr3 (318-454)||(19801785-19801919)
chr3 (318-454)||(36163382-36163518)
chr3 (320-454)||(37463680-37463814)
chr3 (315-350)||(18912544-18912579)
chr3 (391-446)||(20884298-20884353)
chr3 (313-458)||(20998933-20999078)
[»] chr2 (4 HSPs)
chr2 (319-454)||(4753528-4753663)
chr2 (319-446)||(31622039-31622166)
chr2 (319-454)||(36669081-36669216)
chr2 (318-444)||(40894807-40894933)
[»] chr6 (6 HSPs)
chr6 (318-453)||(18191745-18191880)
chr6 (319-400)||(9448746-9448827)
chr6 (319-454)||(30758798-30758933)
chr6 (1-133)||(30496676-30496807)
chr6 (319-369)||(226121-226171)
chr6 (392-454)||(21396367-21396429)
[»] scaffold0115 (4 HSPs)
scaffold0115 (319-405)||(4336-4422)
scaffold0115 (319-405)||(6055-6141)
scaffold0115 (319-405)||(12076-12162)
scaffold0115 (319-405)||(13795-13881)


Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 38921135 - 38921612
Alignment:
Q  1 tgatataattactaaacaaccattgcttttgaagactttcttttacacatgtgcagnnnnnnn--actaccaattgattttcttctgacgtcacaaggct 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||          |||||||||||||||||||||||||||||||||||    
T  38921135 tgatataattactaaacaaccattgcttttgaagactttcttttacacatatgcattttttttttactaccaattgattttcttctgacgtcacaaggct 38921234  T
Q  99 tcaagcttgttatcctatccatcctagtaacaaaacttaagcatgagaagtactacgttgtaacgtcatatcattggtcttctttatgcctaagcagact 198  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  38921235 tcaagcttgttatcctatcgatcctggtaacaaaacttaagcatgagaagtactacgttgtaacgtcacatcattggtcttctttatgcgtaagcagcct 38921334  T
Q  199 gcaaactttttctgcatttcattaagacatgatgtactcttatttccaattgttcttctttataattcagacaatgaccattacactcatttctctcgta 298  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38921335 gcaaactttttatgcatttcattaagacatgatgtactcttatttccaattgttcttatttataattcagacaatgaccattacactcatttctctcgta 38921434  T
Q  299 tctcatccatcttttttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaact 398  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||||||||    
T  38921435 tctcatccatcttttttaatgagtaaaccctcatttgggtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaact 38921534  T
Q  399 cctccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagg 476  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38921535 cccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagg 38921612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 39017329 - 39017179
Alignment:
Q  169 tcattggtcttctttatgcctaagcagactgcaaactttttctgcatttcattaagacatgatgtactcttatttccaattgttcttctttataattcag 268  Q
    ||||||||||||| ||||| ||||||  |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  39017329 tcattggtcttctctatgcgtaagcaacctgcaaactttttctgcatttcatcaaaacatgatgtactcttatttccaattgttcttctttataattcag 39017230  T
Q  269 acaatgaccattacactcatttctctcgtatctcatccatcttttttaatg 319  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  39017229 acaatgaccattacactcatttctctcatatctcattcatcttttttaatg 39017179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 319 - 476
Target Start/End: Complemental strand, 35968757 - 35968600
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    ||||||||||| | |||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||    
T  35968757 gagtaaacccttaattggatccctgaaagtgttgttcgctatcaggcacattcatagatcaatgaaacgaaccaaaaactcccccaattattgttttgtt 35968658  T
Q  419 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagg 476  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  35968657 agtcaaatgcatccaaaacgttaacttggtgttaactttgttatactcatagatgagg 35968600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 446
Target Start/End: Original strand, 16727813 - 16727939
Alignment:
Q  320 agtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtta 419  Q
    ||||||||||||||||||||  |||||||||   ||| |||||| ||| |||||  |||||  |||||||| ||||||| |  |||||  |||| |||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgtta 16727912  T
Q  420 gtcaaatgcatccaaaacgttaacttg 446  Q
    |||||||||||||||||| ||||||||    
T  16727913 gtcaaatgcatccaaaacattaacttg 16727939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 424
Target Start/End: Original strand, 35967351 - 35967453
Alignment:
Q  322 taaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctag-atcaatgaaacgaaccaaaaactcctccaatgattgtttcgttag 420  Q
    ||||||||||||||| ||| |||||||     |||||||||| |||| |||| | |||||| |||| ||||||||||||| |||||| ||||| ||||||    
T  35967351 taaaccctcatttggatccctgaaagttcacatcgttatcagccaca-tcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttag 35967449  T
Q  421 tcaa 424  Q
    ||||    
T  35967450 tcaa 35967453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 30829927 - 30830084
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  30829927 gagtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 30830026  T
Q  419 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagg 476  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30830027 agtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagg 30830084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 453
Target Start/End: Complemental strand, 52190430 - 52190296
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||||||||||||||||| ||||||||    ||| |||||| || || | | ||||||| |||||||||||||||||| ||||||  ||||| |||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgtt 52190331  T
Q  419 agtcaaatgcatccaaaacgttaacttggtattaa 453  Q
    |||||||||||||||||||||||||||||| ||||    
T  52190330 agtcaaatgcatccaaaacgttaacttggtgttaa 52190296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 319 - 446
Target Start/End: Original strand, 52189186 - 52189313
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||||||||||||||||| ||||||||    ||| |||||| ||||| ||| ||||||| |||| || |||||||||   |||||  |||| ||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgtt 52189285  T
Q  419 agtcaaatgcatccaaaacgttaacttg 446  Q
    ||||||||||||||||||||||||||||    
T  52189286 agtcaaatgcatccaaaacgttaacttg 52189313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 42237307 - 42237177
Alignment:
Q  1 tgatataattactaaacaaccattgcttttgaagactttcttttacacatgtgcagnnnnnnnactaccaattgattttcttctgacgtcacaaggcttc 100  Q
    ||||||||||||||||||||| ||  |||| |||||||| |||||||||||||||        ||||  ||||||||| ||||  |||||||||||||||    
T  42237307 tgatataattactaaacaaccctttttttt-aagacttttttttacacatgtgca-aaattttactattaattgatttgcttcgtacgtcacaaggcttc 42237210  T
Q  101 aagcttgttatcctatccatcctagtaacaaaa 133  Q
    |||||||||||||| | ||||||  ||||||||    
T  42237209 aagcttgttatccttttcatcctgataacaaaa 42237177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 31409401 - 31409445
Alignment:
Q  410 tgtttcgttagtcaaatgcatccaaaacgttaacttggtattaac 454  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  31409401 tgttccgttagtcaaatgcatccaaaacgttaacttggtgttaac 31409445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 444
Target Start/End: Complemental strand, 8481006 - 8480884
Alignment:
Q  322 taaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgttagt 421  Q
    ||||| |||||||| |||| |||||||||   ||| |||||| ||| | ||| ||||||||||||| |||||||||||| |||| |  | || |||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  422 caaatgcatccaaaacgttaact 444  Q
    ||    |||||||||||||||||    
T  8480906 cattcccatccaaaacgttaact 8480884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 319 - 476
Target Start/End: Original strand, 41739622 - 41739779
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||||||||||||||| | ||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  41739622 gagtaaaccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 41739721  T
Q  419 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagg 476  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41739722 agtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagg 41739779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 400
Target Start/End: Original strand, 42537718 - 42537797
Alignment:
Q  321 gtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 400  Q
    ||||||||||| |||||||| ||||||||||| ||| ||||||| |||| |||  |||||||||||||||||||||||||    
T  42537718 gtaaaccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactcc 42537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 45292014 - 45291933
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 400  Q
    |||||||||||||||||||||| |||||||||   ||| |||||||||||| |||  ||||| ||| |||||||||||||||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactcc 45291933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 38516620 - 38516701
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 400  Q
    |||||||||||||||||||||| |||||||||   ||| |||||| ||||| ||| |||||| ||| | |||||||||||||    
T  38516620 gagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactcc 38516701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 45296139 - 45296058
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 400  Q
    |||||||||||||||||||||| | |||||||   ||| |||||||||||| | | |||||| ||| |||||||||||||||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactcc 45296058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 40601891 - 40601815
Alignment:
Q  311 tttttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacg 387  Q
    |||||||  ||||||||||||||||||||| |||||||||   ||| |||||||||||| |||||| ||| ||||||    
T  40601891 tttttaaaaagtaaaccctcatttgggtccctgaaagtgtgcctcgctatcaggcacatccctagaacaaggaaacg 40601815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 319 - 476
Target Start/End: Complemental strand, 35063683 - 35063526
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||||||||||||||||  ||||||||||| ||  ||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  35063683 gagtaaaccctcatttgggtctctgaaagtgttgctcactatcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaattattgtttcgtt 35063584  T
Q  419 agtcaaatgcatccaaaacgttaacttggtattaactctgttatactcatagatgagg 476  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  35063583 agtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagg 35063526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 319 - 446
Target Start/End: Original strand, 26529508 - 26529635
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||||||||||||||||| |||||||||   ||| |||||| ||| | |||  |||||  |||||||| |||||||||  ||||| |||||  |||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgtt 26529607  T
Q  419 agtcaaatgcatccaaaacgttaacttg 446  Q
    ||||||||||||||||||||||||||||    
T  26529608 agtcaaatgcatccaaaacgttaacttg 26529635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 319 - 446
Target Start/End: Original strand, 36573962 - 36574089
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||| ||||||| ||||| |||||||||   ||| |||||  ||| | |||  |||||  |||||||| |||||||||  |||||  |||| ||||    
T  36573962 gagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgtt 36574061  T
Q  419 agtcaaatgcatccaaaacgttaacttg 446  Q
    ||||||||||||||||||||||||||||    
T  36574062 agtcaaatgcatccaaaacgttaacttg 36574089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 49919763 - 49919676
Alignment:
Q  318 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 405  Q
    ||||||||| |||||||||||||||||||||||   ||| |||||| ||| | ||| ||||||||||||| |||||||||||| ||||    
T  49919763 tgagtaaactctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaa 49919676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 35062599 - 35062668
Alignment:
Q  354 tcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgttagtca 423  Q
    |||||||||  ||||| |||  |||||| |||| ||||||||||||| |||||| ||||| |||||||||    
T  35062599 tcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtca 35062668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 423
Target Start/End: Complemental strand, 36575598 - 36575494
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    ||||||||||||||||| |||| |||||||||   ||| |||||| ||| | | || |||||  |||||||||||||||| |  |||||  |||| ||||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgtt 36575499  T
Q  419 agtca 423  Q
    |||||    
T  36575498 agtca 36575494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 316 - 444
Target Start/End: Original strand, 17863463 - 17863591
Alignment:
Q  316 aatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttc 415  Q
    ||||||||||||||||||||||||| ||||||||    ||| |||||| ||||| | | ||||||| |||  ||||||||||||||||||||  |||| |    
T  17863463 aatgagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttcc 17863562  T
Q  416 gttagtcaaatgcatccaaaacgttaact 444  Q
    || ||||||||||||||||||||||||||    
T  17863563 gtcagtcaaatgcatccaaaacgttaact 17863591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 453
Target Start/End: Complemental strand, 17864776 - 17864642
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||||||||||||| ||||||||||||    ||| |||||| ||||| ||  ||||||  ||||||||||| ||||||  |||||  | ||| |||    
T  17864776 gagtaaaccctcatttggttccttgaaagtgcatctcgctatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgtt 17864677  T
Q  419 agtcaaatgcatccaaaacgttaacttggtattaa 453  Q
    ||||||||||||||||||| |||||||||| ||||    
T  17864676 agtcaaatgcatccaaaacattaacttggtgttaa 17864642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 319 - 442
Target Start/End: Original strand, 3870768 - 3870891
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    ||||||||||||| |||||||| ||||| ||   |||| |||||| ||| | ||||||||||| || |||| |||||||||| |||||  ||||| ||||    
T  3870768 gagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgtt 3870867  T
Q  419 agtcaaatgcatccaaaacgttaa 442  Q
    |||||| | | |||||||||||||    
T  3870868 agtcaatttcgtccaaaacgttaa 3870891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 446
Target Start/End: Complemental strand, 32565700 - 32565568
Alignment:
Q  314 ttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtt 413  Q
    |||| |||||||||||| ||| ||||| |||||||||   ||| |||||| |   | ||| |||||||  || ||| |||||||||| ||||||   |||    
T  32565700 ttaaggagtaaaccctcgtttaggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaatttaatgaatcaaaaactcccccaatgtacgtt 32565601  T
Q  414 tcgttagtcaaatgcatccaaaacgttaacttg 446  Q
      |||||||||||||||||||||||||||||||    
T  32565600 atgttagtcaaatgcatccaaaacgttaacttg 32565568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 442
Target Start/End: Complemental strand, 3872346 - 3872224
Alignment:
Q  320 agtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtta 419  Q
    ||||||||||| ||||||||| ||||||||    ||| |||||| ||| | |||  |||||| |||||||||||||||||   ||||| || || |||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgtta 3872247  T
Q  420 gtcaaatgcatccaaaacgttaa 442  Q
    ||||| | | |||||||||||||    
T  3872246 gtcaatttcgtccaaaacgttaa 3872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 5014887 - 5014854
Alignment:
Q  317 atgagtaaaccctcatttgggtccttgaaagtgt 350  Q
    |||||||||||||||||||||||| |||||||||    
T  5014887 atgagtaaaccctcatttgggtccctgaaagtgt 5014854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 37241028 - 37241109
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 400  Q
    ||||||| |||| ||||||| | |||||||||   ||| |||||| ||| ||| | ||||||||||||| ||||||||||||    
T  37241028 gagtaaatcctcgtttgggttcctgaaagtgtatctcgctatcagtcacgttcttggatcaatgaaacgcaccaaaaactcc 37241109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 32564510 - 32564538
Alignment:
Q  322 taaaccctcatttgggtccttgaaagtgt 350  Q
    |||||||||||||||||||||||||||||    
T  32564510 taaaccctcatttgggtccttgaaagtgt 32564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 9099559 - 9099698
Alignment:
Q  318 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 417  Q
    ||||||||||||||||||||||| | |||||||   ||| ||||| |||||| |||  |||||||||||||||||||||||| | ||||| | ||| |||    
T  9099559 tgagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttccgt 9099658  T
Q  418 tagtcaaatgcatccaaaacgttaacttggtattaactct 457  Q
    |||||||||   |||||||||||||||| || ||||||||    
T  9099659 tagtcaaataagtccaaaacgttaacttagtgttaactct 9099698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 37465049 - 37464968
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 400  Q
    ||||||||||| |||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||| |||||||||||||    
T  37465049 gagtaaaccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactcc 37464968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 443
Target Start/End: Original strand, 20997633 - 20997757
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||||||||||||||||| ||||| |||   ||| ||||| |||||| ||  ||||||| |||| |||||||||||||| ||||| | ||||||||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgtt 20997732  T
Q  419 agtcaaatgcatccaaaacgttaac 443  Q
    ||||||||   ||||||||||||||    
T  20997733 agtcaaataagtccaaaacgttaac 20997757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 454
Target Start/End: Original strand, 19801785 - 19801919
Alignment:
Q  318 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 417  Q
    ||||||||||||||||  ||||| |||||||||   ||| ||||||  || | | ||||||||| |||||||||||||||||| ||| |  ||| || ||    
T  19801785 tgagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactcccccatt--ttgatttgt 19801882  T
Q  418 tagtcaaatgcatccaaaacgttaacttggtattaac 454  Q
    |||||||||  ||||||||||||||||| || |||||    
T  19801883 tagtcaaatttatccaaaacgttaactttgtgttaac 19801919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 454
Target Start/End: Original strand, 36163382 - 36163518
Alignment:
Q  318 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 417  Q
    |||||||||| |||||||| ||| |||||||||   ||| |||||| |  || |||  ||||||  || ||| |||||||||| ||||||   |||  ||    
T  36163382 tgagtaaaccttcatttggatccctgaaagtgtccctcgctatcagaccaatccctcaatcaatttaatgaatcaaaaactcccccaatgtacgttatgt 36163481  T
Q  418 tagtcaaatgcatccaaaacgttaacttggtattaac 454  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36163482 tagtcaaatgcatccaaaacgttaacttggtgttaac 36163518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 454
Target Start/End: Original strand, 37463680 - 37463814
Alignment:
Q  320 agtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtta 419  Q
    |||||||||||  |||||| | ||||||||||  ||| ||||| |||| | ||| |||||||||||||| |||||||||| || ||||  | || | |||    
T  37463680 agtaaaccctcgcttgggttcctgaaagtgtttctcgctatcaagcacgtccctggatcaatgaaacgatccaaaaactcatctaatgtctcttccatta 37463779  T
Q  420 gtcaaatgcatccaaaacgttaacttggtattaac 454  Q
    ||||  | | ||||||||||||||||||| |||||    
T  37463780 gtcatttacgtccaaaacgttaacttggtgttaac 37463814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 350
Target Start/End: Original strand, 18912544 - 18912579
Alignment:
Q  315 taatgagtaaaccctcatttgggtccttgaaagtgt 350  Q
    |||||||||||||||||||||||||| |||||||||    
T  18912544 taatgagtaaaccctcatttgggtccctgaaagtgt 18912579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 20884298 - 20884353
Alignment:
Q  391 caaaaactcctccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttg 446  Q
    ||||||||||||||||   ||||   ||||||||||||||||||||||||||||||    
T  20884298 caaaaactcctccaatacatgttctcttagtcaaatgcatccaaaacgttaacttg 20884353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 458
Target Start/End: Complemental strand, 20999078 - 20998933
Alignment:
Q  313 tttaatgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgt 412  Q
    |||| |||||||| |||||||| | ||| |||||||||   | |||||||| |||||  ||  |||||||||| |||  ||||||| || ||||| |  |    
T  20999078 tttattgagtaaatcctcatttagatccctgaaagtgtacattgttatcagacacatcactgaatcaatgaaatgaattaaaaacttcttcaatgttgat 20998979  T
Q  413 ttcgttagtcaaatgcatccaaaacgttaacttggtattaactctg 458  Q
    | ||||||| ||||   |||||||||||||||| || |||||||||    
T  20998978 tccgttagttaaataagtccaaaacgttaacttagtgttaactctg 20998933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 454
Target Start/End: Original strand, 4753528 - 4753663
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    |||||||||||| ||||||||| |||||||||   ||| |||||| |   | ||| ||||||| ||| ||| ||||||||||  |||||  ||||| |||    
T  4753528 gagtaaaccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgtt 4753627  T
Q  419 agtcaaatgcatccaaaacgttaacttggtattaac 454  Q
    |||||||||||||||||||||||||||||| |||||    
T  4753628 agtcaaatgcatccaaaacgttaacttggtgttaac 4753663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 446
Target Start/End: Complemental strand, 31622166 - 31622039
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    ||||||||||| |||||||||| |||||||||   |||||||||  ||| | |||  |||||  |||| ||| |||||||||  ||||| ||||| ||||    
T  31622166 gagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtt 31622067  T
Q  419 agtcaaatgcatccaaaacgttaacttg 446  Q
     |||||||||||||||||||||||||||    
T  31622066 tgtcaaatgcatccaaaacgttaacttg 31622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 454
Target Start/End: Complemental strand, 36669216 - 36669081
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    ||||||||||| |||||| ||| ||||||||    ||| |||||| ||| | |||  |||||  |||| ||| |||||||||  |||||  ||||  |||    
T  36669216 gagtaaaccctaatttggatccatgaaagtgcacctcgctatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgtt 36669117  T
Q  419 agtcaaatgcatccaaaacgttaacttggtattaac 454  Q
    |||||||||||||||||||||||||||| |||||||    
T  36669116 agtcaaatgcatccaaaacgttaacttgatattaac 36669081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 444
Target Start/End: Complemental strand, 40894933 - 40894807
Alignment:
Q  318 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 417  Q
    ||||||||||||||||||| ||| | |||||||   ||| ||||||| || | ||| |||||||||||||||| ||||||||| ||||||  | || |||    
T  40894933 tgagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 40894834  T
Q  418 tagtcaaatgcatccaaaacgttaact 444  Q
    ||||||    | |||||||||||||||    
T  40894833 tagtcattcacgtccaaaacgttaact 40894807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 453
Target Start/End: Original strand, 18191745 - 18191880
Alignment:
Q  318 tgagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgt 417  Q
    ||||||||||||||||||||||| |||||||||    || |||||| |   | |||  ||||||  || ||| |||||||||| ||||||  ||||  ||    
T  18191745 tgagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgtatgttatgt 18191844  T
Q  418 tagtcaaatgcatccaaaacgttaacttggtattaa 453  Q
    ||||||||||||||||||||||||||||||||||||    
T  18191845 tagtcaaatgcatccaaaacgttaacttggtattaa 18191880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 9448827 - 9448746
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcc 400  Q
    |||||||||||||||||||||| |||||||||   ||| |||||| ||||| ||| |||||| ||| |||||||||||||||    
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactcc 9448746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 454
Target Start/End: Complemental strand, 30758933 - 30758798
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaatgattgtttcgtt 418  Q
    ||||||||||||||||||||||||||||||||   ||| | |||  | | |   | ||||||| ||  ||| ||||||||||  |||||  ||||| |||    
T  30758933 gagtaaaccctcatttgggtccttgaaagtgtccctcgctgtcacacccgtcatttgatcaataaattgaatcaaaaactccctcaatgtatgttttgtt 30758834  T
Q  419 agtcaaatgcatccaaaacgttaacttggtattaac 454  Q
    ||||||||||||||||||| |||||||||| |||||    
T  30758833 agtcaaatgcatccaaaacattaacttggtgttaac 30758798  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 30496807 - 30496676
Alignment:
Q  1 tgatataattactaaacaaccattgcttttgaagactttcttttacacatgtgcagnnnnnnn-actaccaattgattttcttctgacgtcacaaggctt 99  Q
    |||||||||||||||||| || | |||||| || ||||||||||||||| |||||         |||||||||| |||| ||| |||| ||||||||||     
T  30496807 tgatataattactaaacagccctcgcttttaaaaactttcttttacaca-gtgcaattatttttactaccaattaatttgcttttgac-tcacaaggctg 30496710  T
Q  100 caagcttgttatcctatccatcctagtaacaaaa 133  Q
    ||||||||||||| ||||||||||  ||||||||    
T  30496709 caagcttgttatcatatccatcctgataacaaaa 30496676  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 226121 - 226171
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacat 369  Q
    ||||||||||||||||||||||||||||||||   ||| ||||||||||||    
T  226121 gagtaaaccctcatttgggtccttgaaagtgtgcctcgctatcaggcacat 226171  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 21396367 - 21396429
Alignment:
Q  392 aaaaactcctccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtattaac 454  Q
    ||||||||||||||||  ||||   |||||||||| ||||||||||| ||||||||| |||||    
T  21396367 aaaaactcctccaatgtatgttcttttagtcaaatacatccaaaacgctaacttggtgttaac 21396429  T

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Target: scaffold0115 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 4336 - 4422
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 405  Q
    |||||||||||| ||||| ||| | |||||||   ||| |||||| ||| | ||||||||||||||||| |||||||||||| ||||    
T  4336 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaa 4422  T

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Target: scaffold0115; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 405
Target Start/End: Complemental strand, 6141 - 6055
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 405  Q
    ||||||||||||||||| |||| |||||||||   ||| |||||| | | | ||||||| ||||||||| |||||||||||| ||||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 6055  T

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Target: scaffold0115; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 12076 - 12162
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 405  Q
    |||||||||||| ||||| ||| | |||||||   ||| |||||| ||| | ||||||||||||||||| |||||||||||| ||||    
T  12076 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaa 12162  T

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Target: scaffold0115; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 405
Target Start/End: Complemental strand, 13881 - 13795
Alignment:
Q  319 gagtaaaccctcatttgggtccttgaaagtgttgttcgttatcaggcacattcctagatcaatgaaacgaaccaaaaactcctccaa 405  Q
    ||||||||||||||||| |||| |||||||||   ||| |||||| | | | ||||||| ||||||||| |||||||||||| ||||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 13795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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