View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6726_high_3 (Length: 613)
Name: NF6726_high_3
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6726_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 107 - 591
Target Start/End: Original strand, 28411456 - 28411935
Alignment:
| Q |
107 |
ccctactaactgggctatgttcacgatgactaacttgctagcttgatctttaacatttaagagaaggagttcaaatctccttagttaattgagtttgaaa |
206 |
Q |
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| T |
28411456 |
ccctactaactgagctatgttcacgagtatgaacaagctagtttgatctttaacata-aagag---gagttcaagtctccttagttaattgagtttgaaa |
28411551 |
T |
|
| Q |
207 |
acaatttttgaattacctgtttttattgagtctgaaaacaaatctaatttgatcaaccttaactgcgggcattccttcatggcgatcaaatattgcgtat |
306 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28411552 |
acaatttttgaattacctgtctttattgagtctgaaaacaaatctaatttgatcaaccttaactgctggcattccttcatggcgatcaaatattgcgtat |
28411651 |
T |
|
| Q |
307 |
gaataaaatcctgaatcaccacttctgaaaatgtatctgcatatgtaaatgtgtttcaagcatcattattatttagcttatataataatatagttcctaa |
406 |
Q |
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| T |
28411652 |
gaataaaatccggaatcacctcttctgaaaatgtatctgcatatgtaaatgtgtttcatgcatc---attttttcgcttat---gtaatatagttcctaa |
28411745 |
T |
|
| Q |
407 |
c-----catagttgtccaaaattgttttaaaattgtaacattaaataataatccacctgatgtcgatgtttatgggaacatctgtgccagtcatggaaga |
501 |
Q |
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| T |
28411746 |
ccttaacaaagttgtccaaatttgttctaaaattgtaacattaaataataatccacctgatatcgatgtttatgggaacatctatgccagtcatggaaga |
28411845 |
T |
|
| Q |
502 |
tgtccatgatcttaaaaatgaaacctccaccatattctcattagctgctataactgaaaattttgtcccatggattctgcagcatggttt |
591 |
Q |
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| T |
28411846 |
tgtccatgatcttaaaaatgaaacctccaccatattctcattagctactataactgaaaattttgtcccatggattctgcaacatggttt |
28411935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 28383496 - 28383380
Alignment:
| Q |
231 |
attgagtctgaaaacaaatctaatttgatcaaccttaactgcgggcattccttcatggcgatcaaatattgcgtatgaataaaatcctgaatcaccactt |
330 |
Q |
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||||||| |||||||| |||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28383496 |
attgagtttgaaaacatatctaatttgatcaacctcaactgctggcattccttcagggcgatcaaatattgcatatgaataaaatcctgaatcaccactt |
28383397 |
T |
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| Q |
331 |
ctgaaaatgtatctgca |
347 |
Q |
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| T |
28383396 |
ctgaaaatgtatctgca |
28383380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 448 - 582
Target Start/End: Complemental strand, 28383284 - 28383150
Alignment:
| Q |
448 |
aataatccacctgatgtcgatgtttatgggaacatctgtgccagtcatggaagatgtccatgatcttaaaaatgaaacctccaccatattctcattagct |
547 |
Q |
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|||||||||||| |||| |||||||| || |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28383284 |
aataatccaccttttgtctatgtttatagggacatctttgccactcattgaagatgtccatgatcttaaaaatgaaacctccaccatattctcatcagct |
28383185 |
T |
|
| Q |
548 |
gctataactgaaaattttgtcccatggattctgca |
582 |
Q |
| |
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| T |
28383184 |
gctataaccgaaaagtttgttccttcgattctgca |
28383150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 451 - 583
Target Start/End: Complemental strand, 28391431 - 28391299
Alignment:
| Q |
451 |
aatccacctgatgtcgatgtttatgggaacatctgtgccagtcatggaagatgtccatgatcttaaaaatgaaacctccaccatattctcattagctgct |
550 |
Q |
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||||||||| || || ||||||||||| |||| | ||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||| |||||| |
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| T |
28391431 |
aatccaccttatatctatgtttatggggacatttttgccactcatggaatgtgtccataatcttgaaaatgaaacctccaccatattctcatcagctgca |
28391332 |
T |
|
| Q |
551 |
ataactgaaaattttgtcccatggattctgcag |
583 |
Q |
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| T |
28391331 |
ataactgaaaaatttgtcccatggattctgcag |
28391299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 220 - 350
Target Start/End: Complemental strand, 28391634 - 28391504
Alignment:
| Q |
220 |
tacctgtttttattgagtctgaaaacaaatctaatttgatcaaccttaactgcgggcattccttcatggcgatcaaatattgcgtatgaataaaatcctg |
319 |
Q |
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||||||| ||||| |||| ||||||||||||||||||||||||||| || | | |||||||||| | |||| ||||| || |||||||||||||| | |
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| T |
28391634 |
tacctgtctttatcgagtttgaaaacaaatctaatttgatcaacctcaattcctggcattcctttcggtcgattgaatatcgcatatgaataaaatccag |
28391535 |
T |
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| Q |
320 |
aatcaccacttctgaaaatgtatctgcatat |
350 |
Q |
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| T |
28391534 |
aatcaccacttctgaaaatgtacctgcatat |
28391504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 28411317 - 28411391
Alignment:
| Q |
8 |
gaacctgtgatattgatttttcattaggaaatgtttctgaaacgttttcttaaatagtctaatggcttgaatttc |
82 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| ||||||| |
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| T |
28411317 |
gaacctgtgccattgatttttcattaggaaatgtttatgaaacattttcgaaaataatctaatggctagaatttc |
28411391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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