View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6726_high_5 (Length: 391)

Name: NF6726_high_5
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6726_high_5
NF6726_high_5
[»] chr1 (6 HSPs)
chr1 (143-391)||(41602774-41603025)
chr1 (262-377)||(16263771-16263886)
chr1 (264-382)||(1670845-1670964)
chr1 (264-381)||(41602121-41602237)
chr1 (264-381)||(6815914-6816032)
chr1 (204-248)||(41602051-41602095)
[»] chr4 (10 HSPs)
chr4 (263-391)||(9470307-9470438)
chr4 (195-377)||(56395483-56395665)
chr4 (192-374)||(6230071-6230255)
chr4 (264-381)||(53648224-53648342)
chr4 (264-381)||(9470975-9471091)
chr4 (195-243)||(9470234-9470282)
chr4 (199-246)||(53648156-53648203)
chr4 (278-367)||(53721797-53721887)
chr4 (195-246)||(4780132-4780183)
chr4 (195-248)||(9471116-9471169)
[»] chr5 (1 HSPs)
chr5 (194-377)||(41196009-41196192)
[»] chr7 (6 HSPs)
chr7 (196-377)||(33141872-33142052)
chr7 (262-377)||(2946532-2946647)
chr7 (262-374)||(6483601-6483713)
chr7 (262-377)||(37998008-37998123)
chr7 (195-248)||(37998142-37998195)
chr7 (194-246)||(36029113-36029165)
[»] chr2 (5 HSPs)
chr2 (195-377)||(23988251-23988436)
chr2 (195-377)||(29099970-29100156)
chr2 (265-364)||(9206775-9206875)
chr2 (153-193)||(6849790-6849830)
chr2 (302-374)||(7358025-7358097)
[»] chr3 (1 HSPs)
chr3 (195-377)||(50035304-50035491)
[»] chr6 (1 HSPs)
chr6 (262-377)||(14799521-14799636)
[»] chr8 (1 HSPs)
chr8 (265-379)||(42189144-42189259)
[»] scaffold0633 (1 HSPs)
scaffold0633 (204-248)||(1-45)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 143 - 391
Target Start/End: Complemental strand, 41603025 - 41602774
Alignment:
Q  143 aagctttctattgagttcactttatgaagcatgtttgaagatcattaactacggctccgtttccggtaggaggcctgaataggtcacctaccgtaggaga 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||| |||||||||||||||||||||||||||    
T  41603025 aagctttctattgagttcactttatgaagcatgtttgaagatcattaactacaactccgtttccggtaagagacctgaataggtcacctaccgtaggaga 41602926  T
Q  243 catgacnnnnnnnnnnnnn---ggcaaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttaatatatacctccaacaccta 339  Q
     ||| |                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41602925 tatggcttctttttttttttttggcaaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttactatatacctccaacaccta 41602826  T
Q  340 attactttcttttattctaaattactcttctctttactctcttgccctatct 391  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41602825 attactttcttttattctaaattactcttctctttactctctcgccctatct 41602774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 377
Target Start/End: Original strand, 16263771 - 16263886
Alignment:
Q  262 ggcaaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaat 361  Q
    ||||||||||||||||||||||||||||    |||| || |||||||  ||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  16263771 ggcaaaataaatatgaaccattggataaaaggaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaat 16263870  T
Q  362 tactcttctctttact 377  Q
    ||||||||||||||||    
T  16263871 tactcttctctttact 16263886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 382
Target Start/End: Complemental strand, 1670964 - 1670845
Alignment:
Q  264 caaaataaatatgaaccattggataaggataaatcaat-tttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaatt 362  Q
    |||||| ||||||||||||| ||||||||| || |||  ||| |||| ||||| ||| |||| |||||||||| | ||||||||||||||||||||||||    
T  1670964 caaaatgaatatgaaccattagataaggattaaccaacatttagattaaaatgtttactatacacctccaacatccaattactttcttttattctaaatt 1670865  T
Q  363 actcttctctttactctctt 382  Q
    |||||||||||| |||||||    
T  1670864 actcttctctttcctctctt 1670845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 381
Target Start/End: Original strand, 41602121 - 41602237
Alignment:
Q  264 caaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaatta 363  Q
    ||||||||||||||||||||||||||   ||||| || |||||||  ||||||||| |||| ||||| |||||  ||||||| |||||||||||||||||    
T  41602121 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttattatacacctctaacactcaattactctcttttattctaaatta 41602220  T
Q  364 ctcttctctttactctct 381  Q
    || |||||||| ||||||    
T  41602221 ct-ttctctttcctctct 41602237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 381
Target Start/End: Complemental strand, 6816032 - 6815914
Alignment:
Q  264 caaaataaatatgaaccattggataaggataaatcaat-tttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaatt 362  Q
    |||||| ||||||||||||| ||||||||| || |||  ||| |||  ||||| ||  |||| |||||||||||| ||||||||||||||||| ||||||    
T  6816032 caaaatgaatatgaaccattagataaggattaaccaacatttagatcaaaatgtttgctatacacctccaacacccaattactttcttttattttaaatt 6815933  T
Q  363 actcttctctttactctct 381  Q
    |||||||||||| ||||||    
T  6815932 actcttctctttcctctct 6815914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 41602051 - 41602095
Alignment:
Q  204 tccggtaggaggcctgaataggtcacctaccgtaggagacatgac 248  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  41602051 tccggtaggagacctgaataggtcacctaccgtaggagacatgac 41602095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 263 - 391
Target Start/End: Original strand, 9470307 - 9470438
Alignment:
Q  263 gcaaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttaatata---tacctccaacacctaattactttcttttattctaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||| ||||||||||| |||||||||||||||    
T  9470307 gcaaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttactatatactacctcccacacctaattattttcttttattctaa 9470406  T
Q  360 attactcttctctttactctcttgccctatct 391  Q
    |||||||||||||||||||||| |||||||||    
T  9470407 attactcttctctttactctctcgccctatct 9470438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 195 - 377
Target Start/End: Original strand, 56395483 - 56395665
Alignment:
Q  195 ggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatgacnnnnnnnnnnnnnggcaaaataaatatgaaccattggataaggata 294  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |             ||||||||||||||||||||||||||||   ||    
T  56395483 ggctccgtttccggtaggagacctgaataggtcacctaccgtaggagacatggctatttttttttttggcaaaataaatatgaaccattggataaaagta 56395582  T
Q  295 aatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaattactcttctctttact 377  Q
    ||| || |||||||  ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  56395583 aattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaattactattctctttact 56395665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 192 - 374
Target Start/End: Original strand, 6230071 - 6230255
Alignment:
Q  192 tacggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatgacnnnnnnnnnnnnn--ggcaaaataaatatgaaccattggataa 289  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| ||||||| |               ||||||||||||||||||||||||||||    
T  6230071 tacggctccgtttccggtaggagatctgaataggtcacctaccgtagaagacatggctatttttttttttttggcaaaataaatatgaaccattggataa 6230170  T
Q  290 ggataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaattactcttctcttt 374  Q
       ||||| || |||||||  ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  6230171 aagtaaattaaatttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaattactcttctcttt 6230255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 381
Target Start/End: Original strand, 53648224 - 53648342
Alignment:
Q  264 caaaataaatatgaaccattggataaggataaatcaat-tttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaatt 362  Q
    |||||| ||||||||| ||| ||||||||| || |||  ||| |||  ||||| ||| |||| |||||||||||| ||||||||||||||||||||||||    
T  53648224 caaaatgaatatgaactattagataaggattaaccaacatttagatcaaaatgtttactatacacctccaacacccaattactttcttttattctaaatt 53648323  T
Q  363 actcttctctttactctct 381  Q
    |||||||||||| ||||||    
T  53648324 actcttctctttcctctct 53648342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 381
Target Start/End: Complemental strand, 9471091 - 9470975
Alignment:
Q  264 caaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaatta 363  Q
    |||||||||||||||||||| |||||   ||||| || |||||||  ||||||||| || | ||||| |||||| ||||||| |||||||||||||||||    
T  9471091 caaaataaatatgaaccattagataaaagtaaattaactttggatcaaaatgcttactacacacctctaacacccaattactctcttttattctaaatta 9470992  T
Q  364 ctcttctctttactctct 381  Q
    || |||||||| ||||||    
T  9470991 ct-ttctctttcctctct 9470975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 9470234 - 9470282
Alignment:
Q  195 ggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagac 243  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9470234 ggctccgtttccggtaggagacctgaataggtcacctaccgtaggagac 9470282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 53648156 - 53648203
Alignment:
Q  199 ccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatg 246  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||    
T  53648156 ccgtctccggtgggagacctgaataggtcacctaccgtaggagacatg 53648203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 367
Target Start/End: Original strand, 53721797 - 53721887
Alignment:
Q  278 accattggataaggataaatcaa-ttttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaattactct 367  Q
    |||||||||||||| | ||| || ||||||||  ||||||||| |||| ||||| |||||  ||||||||||||||||| ||| |||||||    
T  53721797 accattggataagggttaattaacttttggatcaaaatgcttactatacacctcaaacactcaattactttcttttattttaatttactct 53721887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 4780183 - 4780132
Alignment:
Q  195 ggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatg 246  Q
    ||||||||||||||| |||| ||| |||||||| |||||| |||||||||||    
T  4780183 ggctccgtttccggtgggagacctcaataggtctcctaccataggagacatg 4780132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 9471169 - 9471116
Alignment:
Q  195 ggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatgac 248  Q
    ||||| || ||| ||||||| ||||| ||| |||||||||||||||||||||||    
T  9471169 ggctctgtctcctgtaggagacctgagtagatcacctaccgtaggagacatgac 9471116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 194 - 377
Target Start/End: Original strand, 41196009 - 41196192
Alignment:
Q  194 cggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatgacnnnnnnnnnnnnnggcaaaataaatatgaaccattggataaggat 293  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |             ||||||||||||||||||||||||||||   |    
T  41196009 cggctccgtttccggtaggaggtctgaataggtcacctaccgtaggagacatggctatttttttttttggcaaaataaatatgaaccattggataaaagt 41196108  T
Q  294 aaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaattactcttctctttact 377  Q
    |||| || |||||||  ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  41196109 aaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaattactcttctctttact 41196192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 196 - 377
Target Start/End: Original strand, 33141872 - 33142052
Alignment:
Q  196 gctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatgacnnnnnnnnnnnnnggcaaaataaatatgaaccattggataaggataa 295  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||             ||||||||||||||||||||||||||||   |||    
T  33141872 gctccgtttccggtaggagacctgaatagatcacctaccgtaggagacatgactatttttttttt-ggcaaaataaatatgaaccattggataaaagtaa 33141970  T
Q  296 atcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaattactcttctctttact 377  Q
    || || |||||||  ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  33141971 attaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaattactcttctctttact 33142052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 262 - 377
Target Start/End: Original strand, 2946532 - 2946647
Alignment:
Q  262 ggcaaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaat 361  Q
    ||||||||||||||||||||||||||||   ||||| || |||||||  ||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  2946532 ggcaaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaat 2946631  T
Q  362 tactcttctctttact 377  Q
    ||||||||||||||||    
T  2946632 tactcttctctttact 2946647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 6483601 - 6483713
Alignment:
Q  262 ggcaaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaat 361  Q
    ||||||||||||||||||||||||||||   ||||| || |||||||  ||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  6483601 ggcaaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaat 6483700  T
Q  362 tactcttctcttt 374  Q
    |||||||||||||    
T  6483701 tactcttctcttt 6483713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 377
Target Start/End: Complemental strand, 37998123 - 37998008
Alignment:
Q  262 ggcaaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaat 361  Q
    ||||||||||||||||||||||||||||   ||||| || |||||||  ||||||||| ||||||||||| ||||| ||||||||||||||||||||| |    
T  37998123 ggcaaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaatt 37998024  T
Q  362 tactcttctctttact 377  Q
    ||||||||||||||||    
T  37998023 tactcttctctttact 37998008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 37998195 - 37998142
Alignment:
Q  195 ggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatgac 248  Q
    |||||||||||| ||||||| |||||||| |||||||| |||||||||||||||    
T  37998195 ggctccgtttccagtaggagacctgaataagtcacctatcgtaggagacatgac 37998142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 36029113 - 36029165
Alignment:
Q  194 cggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatg 246  Q
    |||||||||||||||| |||| ||| |||||||| |||||| |||||||||||    
T  36029113 cggctccgtttccggttggagacctcaataggtctcctaccataggagacatg 36029165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 195 - 377
Target Start/End: Original strand, 23988251 - 23988436
Alignment:
Q  195 ggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatgacnnnnnnnnnnnnn---ggcaaaataaatatgaaccattggataagg 291  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |                |||||||||||||||||| |||||||||      
T  23988251 ggctccgttttcggtaggagacctgaataggtcacctaccgtaggagacatggctatttttattttttttggcaaaataaatatgaactattggataaaa 23988350  T
Q  292 ataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaattactcttctctttact 377  Q
     ||||| || |||||||  ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  23988351 gtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaattactcttctctttact 23988436  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 195 - 377
Target Start/End: Original strand, 29099970 - 29100156
Alignment:
Q  195 ggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatgacnnnnnnnnnnnnn----ggcaaaataaatatgaaccattggataag 290  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |                 |  |||||||||||||||||||||||||     
T  29099970 ggctccgtttccggtaggagacctgaataggtcacctaccgtaggagacatggctttttttttttttttttgataaaataaatatgaaccattggataaa 29100069  T
Q  291 gataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaattactcttctctttact 377  Q
      ||||| || |||||||  ||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  29100070 agtaaattaactttggatcaaaatgtttactatatacctcccacaccgaattactttcttttattctaaattactcttctctttact 29100156  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 9206875 - 9206775
Alignment:
Q  265 aaaataaatatgaaccattggataaggataaatcaatttt-ggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaatta 363  Q
    ||||||||||||||||||||||||||||| ||  |||||| ||||  |||| |||| |||| |||||||||||| |||| || |||||||||||||||||    
T  9206875 aaaataaatatgaaccattggataaggattaactaatttttggatcaaaatacttactatacacctccaacacccaattgctatcttttattctaaatta 9206776  T
Q  364 c 364  Q
    |    
T  9206775 c 9206775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 6849790 - 6849830
Alignment:
Q  153 ttgagttcactttatgaagcatgtttgaagatcattaacta 193  Q
    ||||||| |||||||||||| ||||||||||||||||||||    
T  6849790 ttgagtttactttatgaagcgtgtttgaagatcattaacta 6849830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 7358097 - 7358025
Alignment:
Q  302 tttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaattactcttctcttt 374  Q
    |||| ||| ||||||||| |||| || ||||||| | ||||  ||||||||||||||||||||| || |||||    
T  7358097 tttgaattaaaatgcttactatacacttccaacatccaattgttttcttttattctaaattactattttcttt 7358025  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 195 - 377
Target Start/End: Original strand, 50035304 - 50035491
Alignment:
Q  195 ggctccgtttccggtaggaggcctgaataggtcacctaccgtaggagacatgacnnnnnnnnnnnnn-----ggcaaaataaatatgaaccattggataa 289  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |                  ||||||||||||||||||||||||||||    
T  50035304 ggctccgttttcggtaggagacctgaataggtcacctaccgtaggagacatggctattttttatttttttttggcaaaataaatatgaaccattggataa 50035403  T
Q  290 ggataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaattactcttctctttact 377  Q
       ||||| || |||||||  ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  50035404 aagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaattacttttctctttact 50035491  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 377
Target Start/End: Original strand, 14799521 - 14799636
Alignment:
Q  262 ggcaaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttaatatatacctccaacacctaattactttcttttattctaaat 361  Q
    ||||||||||||||||||||||| ||||   ||||| || |||||||  |||| |||| ||||||||||| ||||| |||||||||||||||||||||||    
T  14799521 ggcaaaataaatatgaaccattgaataaaagtaaattaactttggatcaaaattcttactatatacctcccacaccgaattactttcttttattctaaat 14799620  T
Q  362 tactcttctctttact 377  Q
    ||||||||||||||||    
T  14799621 tactcttctctttact 14799636  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 379
Target Start/End: Original strand, 42189144 - 42189259
Alignment:
Q  265 aaaataaatatgaaccattggataaggataaatcaattttggattcaaa-tgcttaatatatacctccaacacctaattactttcttttattctaaatta 363  Q
    ||||| |||| |||||||||||||| | | ||| || ||| || ||||| |||||| |||| |||||||||||| ||||| ||| |||||||||||||||    
T  42189144 aaaatgaatacgaaccattggataaaggttaattaacttttgaatcaaaatgcttactatacacctccaacacccaattattttgttttattctaaatta 42189243  T
Q  364 ctcttctctttactct 379  Q
    ||||||||||| ||||    
T  42189244 ctcttctcttttctct 42189259  T

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Target: scaffold0633 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 45 - 1
Alignment:
Q  204 tccggtaggaggcctgaataggtcacctaccgtaggagacatgac 248  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  45 tccggtaggagacctgaataggtcacctaccgtaggagacatgac 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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