View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6726_low_13 (Length: 331)
Name: NF6726_low_13
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6726_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 38029893 - 38030097
Alignment:
| Q |
5 |
acaattcgacatgaatatggattatgggccttccattgggatgacgaggctggcaagatgggagcgtgcaaaggagtggaaaaagaaacctccgctggaa |
104 |
Q |
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| T |
38029893 |
acaattcgacctgaacatggattatgggcctagcattgggctgacgaggctggaacgatgggagcgtgcaaagaagtgggatatgaatcctccgcaggaa |
38029992 |
T |
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| Q |
105 |
attaaggaactgatcttgaagagtggtaatgatcagcaagaaggcctgtggaacaaacacgtttagaaggcttagatgttagtataatatataatcttgt |
204 |
Q |
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| T |
38029993 |
attaaggaactgatcttgaagagtggtaatgatcagcaagaaggcctatggaacaaacgcgtttagaaggcttagatgttagtataatatataatcttgt |
38030092 |
T |
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| Q |
205 |
ttctt |
209 |
Q |
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||||| |
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| T |
38030093 |
ttctt |
38030097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 313
Target Start/End: Original strand, 38030111 - 38030232
Alignment:
| Q |
193 |
atataatcttgtttctttatggaccttcttgcttagatttttctttgggaaaatcagtttcggttagtgtgttttgttacacaagttttatc-gatgtta |
291 |
Q |
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| T |
38030111 |
atataatcttgtttctttatggacctttttgtttagatttttcttagggaaaatcagtttctgttagtgtgttttgttttacaagttttatcaaatgtta |
38030210 |
T |
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| Q |
292 |
attggctgttaagtgaatgttg |
313 |
Q |
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| T |
38030211 |
attggctcttaagtgaatgttg |
38030232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 38038214 - 38038282
Alignment:
| Q |
5 |
acaattcgacatgaatatggattatgggccttccattgggatgacgaggctggcaagatgggagcgtgc |
73 |
Q |
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|||||| |||||||| ||| | |||||||||| || |||||||||||||||||| | | ||||||||| |
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| T |
38038214 |
acaatttgacatgaacatgaagtatgggccttgtatggggatgacgaggctggcacgcttggagcgtgc |
38038282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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