View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6726_low_16 (Length: 294)
Name: NF6726_low_16
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6726_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 33461803 - 33461526
Alignment:
| Q |
14 |
tttaacccttcccaaggttggattgggccacctcatgctcctcctcgtatgcctcccaccatgtttcgatgatccatctgcaattataatacatgcatca |
113 |
Q |
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| T |
33461803 |
tttaacccttccaaaggttggattgggccacctcatgctcctcctcgtatgcctcccaccatgtttcgatgatccatctgcaactataatacatgcatca |
33461704 |
T |
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| Q |
114 |
atttagagttaatcaatttctgtcttagtcatgttacatctataatttgcagcagtactattaattaacagtgcctttttctatgcttattactacttag |
213 |
Q |
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|||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33461703 |
atttagagttaatcaacttctgtcatagtcatgttatatctataatttgcagcagtactattaattaacagtgcctttttctatgcttattactacttag |
33461604 |
T |
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| Q |
214 |
tatgaccgtgataatgtatttattacagtatactgtcatttagaaattcaactgtgatgagtaatcttattggttcat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33461603 |
tatgaccgtgataatgtatttattacagtatactgtcatttagaaattcaactgtgatgagtaatcttattggttcat |
33461526 |
T |
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