View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6726_low_18 (Length: 290)
Name: NF6726_low_18
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6726_low_18 |
 |  |
|
| [»] scaffold0005 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 5051610 - 5051479
Alignment:
| Q |
1 |
ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt |
100 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5051610 |
ggtggttttagtacaatagttgcg-----gttgttttcttccttgcgtgtgctgagtttgcggctcttagaaaaatacaaattgtctggtgtttttgtgt |
5051516 |
T |
 |
| Q |
101 |
ggtggttgtttccttccaatccagatatatgtggagg |
137 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5051515 |
ggtggttgtttccttccaatccagatctatgtggagg |
5051479 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 5051413 - 5051339
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5051413 |
gtcttcaacggttgggttcgatcataaccttctcatccggtttgactactctgttatatggtggtttgttgatgt |
5051339 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 36592929 - 36592861
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt |
271 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
36592929 |
gtcttcaactgttgggttcgatcataaccttctcacccggtttggctactctgttatctggtggtttgt |
36592861 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 36593095 - 36592995
Alignment:
| Q |
37 |
tcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggag |
136 |
Q |
| |
|
||||||||| | ||| |||||||||| | || |||||| ||| |||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
36593095 |
tcttccttgtgggtgttgagtttgcggttgttggaaaaacacatgctgtctggtgtttttgtgtggtgattgtttccttctgatccagatctatgtggag |
36592996 |
T |
 |
| Q |
137 |
g |
137 |
Q |
| |
|
| |
|
|
| T |
36592995 |
g |
36592995 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 15121352 - 15121472
Alignment:
| Q |
17 |
tagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttc |
116 |
Q |
| |
|
|||||||| || ||||| ||||||||||||| |||||||||||||| |||||||||||| | || |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
15121352 |
tagttgcggcggtgttggtttcttccttgcgggtgctgagtttgcggctcttagaaaaacataggttgtctggtgcttttgtgtggtggatgtttccttc |
15121451 |
T |
 |
| Q |
117 |
caatccagatatatgtggagg |
137 |
Q |
| |
|
| |||||||| ||| |||||| |
|
|
| T |
15121452 |
cgatccagatctatatggagg |
15121472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 5892811 - 5892912
Alignment:
| Q |
34 |
ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| ||||||||| || ||||| |||||| |
|
|
| T |
5892811 |
ttttcttccttgcggatgctgagtttgcggctattagaaaaacacaggttgtctggtgtttttgtgtggtggt--tttccttccgattcagatctatgtg |
5892908 |
T |
 |
| Q |
134 |
gagg |
137 |
Q |
| |
|
|||| |
|
|
| T |
5892909 |
gagg |
5892912 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 36934426 - 36934323
Alignment:
| Q |
34 |
ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg |
133 |
Q |
| |
|
||||| |||| ||| |||||||||||||| || ||||||||| |||| |||||||||||||||||||||||| ||||||||||| || |||| |||||| |
|
|
| T |
36934426 |
ttttcgtcctagcgggtgctgagtttgcggctgttagaaaaacacagtttgtctggtgtttttgtgtggtggatgtttccttccgattaagatctatgtg |
36934327 |
T |
 |
| Q |
134 |
gagg |
137 |
Q |
| |
|
|||| |
|
|
| T |
36934326 |
gagg |
36934323 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 5892978 - 5893052
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
5892978 |
gtcttcaacggttgggttcaatcagaaccttctcatccggttcgattactctgttatctggtggtttgtcgatgt |
5893052 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 26199981 - 26199880
Alignment:
| Q |
34 |
ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagat---tgtctggtgtttttgtgtggtggttgtttccttccaatccagatatat |
130 |
Q |
| |
|
||||||||||| | |||||||||||||| || ||||||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
26199981 |
ttttcttccttcctggtgctgagtttgcggctgttagaaaaacacagttggttgtctggtgtttttgtgtggtggttgtttccttccgatccagatctat |
26199882 |
T |
 |
| Q |
131 |
gt |
132 |
Q |
| |
|
|| |
|
|
| T |
26199881 |
gt |
26199880 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 47589261 - 47589127
Alignment:
| Q |
1 |
ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt |
100 |
Q |
| |
|
||||||||||||| |||||||| || || |||||||||||| | | || ||||||||||||| ||||||||| |||| |||| |||||||||||||| |
|
|
| T |
47589261 |
ggtggttttggtactgtagttgcggcggtgctgttttcttcctcgtgggtattgagtttgcgacttttagaaaaacacaggttgtttggtgtttttgtgt |
47589162 |
T |
 |
| Q |
101 |
ggtggttgtttccttccaatccagatatatgtgga |
135 |
Q |
| |
|
||||| ||||||||| |||||| | |||||||| |
|
|
| T |
47589161 |
ggtggacgtttccttctgatccaggtctatgtgga |
47589127 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 36934268 - 36934201
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttg |
270 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
36934268 |
gtcttcaacggttgggttcgatcagaaccttctcatctggttcgactactctattatctggtggtttg |
36934201 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 40074342 - 40074398
Alignment:
| Q |
215 |
tgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt |
271 |
Q |
| |
|
||||||| |||| ||||||||||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
40074342 |
tgggttcgatcagaaccttctcatccggttcgactactatgttatctggtggtttgt |
40074398 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 26199809 - 26199735
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||| ||| ||||||||| |||| ||||||||||| ||||| |
|
|
| T |
26199809 |
gtcttcaatggttgggttcgatcagtaccttctcatcaggttcgactactctattatttggtggtttgtcgatgt |
26199735 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 47589059 - 47588985
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||| |||||||| |||| |||| || |||||||||| ||||||||||| ||||||||| || ||||| ||||| |
|
|
| T |
47589059 |
gtctttaacggttgagttcgatcagaatcttctcatccggtttgactactgtgttatctgatgatttgtcgatgt |
47588985 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 15121538 - 15121593
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttat |
259 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
15121538 |
gtcttcaacggttgg-ttcgatcagaaccttctcatctggttcgactactctgttat |
15121593 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 9436646 - 9436510
Alignment:
| Q |
1 |
ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt |
100 |
Q |
| |
|
||||||||||||| |||||||| | | ||||| ||||||||||||| |||||||||||||| |||||||||||| ||| || ||| |||||||||||| |
|
|
| T |
9436646 |
ggtggttttggtacaatagttgtggtggtgttgctttcttccttgcgggtgctgagtttgcggctcttagaaaaacacatgttttctagtgtttttgtgt |
9436547 |
T |
 |
| Q |
101 |
ggtggttgtttccttccaatccagatatatgtggagg |
137 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
9436546 |
ggtgtatgtttccttccgatccagatctatgtggagg |
9436510 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 27632083 - 27632175
Alignment:
| Q |
34 |
ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagat |
126 |
Q |
| |
|
||||||| |||||| |||||||||||||| || |||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27632083 |
ttttctttcttgcgggtgctgagtttgcggctgttagaaaagcacaagttgtttggtgtttttgtgtggtggttgtttccttccgatccagat |
27632175 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 36607762 - 36607862
Alignment:
| Q |
37 |
tcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggag |
136 |
Q |
| |
|
||||||||||| || ||||||| | || ||||||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36607762 |
tcttccttgcgggtatggagtttgtggctgttagaaaaacacaggttgtctgatgtttttgcttggtggttgtttccttccaatccagatttatgtggag |
36607861 |
T |
 |
| Q |
137 |
g |
137 |
Q |
| |
|
| |
|
|
| T |
36607862 |
g |
36607862 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 33758364 - 33758261
Alignment:
| Q |
32 |
tgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatg |
131 |
Q |
| |
|
||||||||| |||| | || ||||||||||| | ||||||||| |||| |||||||||||||| ||||||||| ||||||||||| |||||||| | || |
|
|
| T |
33758364 |
tgttttctttcttgtgggtactgagtttgcggccgttagaaaaacacaggttgtctggtgttttagtgtggtggatgtttccttccgatccagatctttg |
33758265 |
T |
 |
| Q |
132 |
tgga |
135 |
Q |
| |
|
|||| |
|
|
| T |
33758264 |
tgga |
33758261 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 33758193 - 33758121
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| |||||||| ||||| |
|
|
| T |
33758193 |
gtcttcaacggttgggttcgatcagaaccttctcatccagttcgacta--ctgttatctgatggtttgtcgatgt |
33758121 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 9436444 - 9436370
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||||| ||| || ||||||||||||| ||||||||| ||||| |
|
|
| T |
9436444 |
gtcttcaacggctgagttcaatcaaaaccttctcatctggttcgattactctgttatctagtggtttgtcgatgt |
9436370 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 22696740 - 22696637
Alignment:
| Q |
34 |
ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg |
133 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||| |||| || |||||||||| |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
22696740 |
ttttcttccttgcgggtgctgagtttgcggctgttagaaaaacacaggttatctggtgtttatgtgtggtggttgtttccttccgatccagatctatgtg |
22696641 |
T |
 |
| Q |
134 |
gagg |
137 |
Q |
| |
|
|||| |
|
|
| T |
22696640 |
gagg |
22696637 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 34502876 - 34502968
Alignment:
| Q |
34 |
ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagat |
126 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||| |||| |||| ||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34502876 |
ttttcttccttgcgggtgctgagtttgcggttgttagtaaaacacaggttgtctgttgtttttgtgtggtcgttgtttccttccaatccagat |
34502968 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 22696571 - 22696503
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt |
271 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
22696571 |
gtcttcaacggttgggttcgatcataaccttttcatccggttcgactactctattatctggtggtttgt |
22696503 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 34503045 - 34503119
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||||| ||| || | |||||||| | || ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
34503045 |
gtcttcaacggttggtttcgataagaaccttctaagcctgttcgactactctgttatctggtggtttgctgatgt |
34503119 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 24045609 - 24045649
Alignment:
| Q |
231 |
cttctcatccagtttgactactctgttatctggtggtttgt |
271 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
24045609 |
cttctcatccggttcgactactctgttatctggtggtttgt |
24045649 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 47268 - 47404
Alignment:
| Q |
1 |
ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt |
100 |
Q |
| |
|
||||||||||||| ||| ||| ||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| ||| |||||| || |||| |
|
|
| T |
47268 |
ggtggttttggtactgtagccgcggcgatgatgttttcttccttgcgggtgctgagtttgcgactgttagaaaaacacaggttgcctggtgaattcgtgt |
47367 |
T |
 |
| Q |
101 |
ggtggttgtttccttccaatccagatatatgtggagg |
137 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| |
|
|
| T |
47368 |
ggtggttgtttccttctgatccagatctatgtggagg |
47404 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 47470 - 47544
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
47470 |
gtcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcgatgt |
47544 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 14792463 - 14792327
Alignment:
| Q |
1 |
ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt |
100 |
Q |
| |
|
||||||||||||| ||| ||| ||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| ||| |||||| || |||| |
|
|
| T |
14792463 |
ggtggttttggtactgtagccgcggcgatgatgttttcttccttgcgggtgctgagtttgcgactgttagaaaaacacaggttgcctggtgaattcgtgt |
14792364 |
T |
 |
| Q |
101 |
ggtggttgtttccttccaatccagatatatgtggagg |
137 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| |
|
|
| T |
14792363 |
ggtggttgtttccttctgatccagatctatgtggagg |
14792327 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 50589793 - 50589677
Alignment:
| Q |
17 |
tagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| | ||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
50589793 |
tagttgcgacgatgttgttttcttccatgcaggtgctgagtttgcgactgttagaaatacacatgttgtttggtgtttatgtgtggtggttgtttccttt |
50589694 |
T |
 |
| Q |
117 |
caatccagatatatgtg |
133 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
50589693 |
tgatccagatatatgtg |
50589677 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 12888439 - 12888336
Alignment:
| Q |
34 |
ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg |
133 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||| |||| |||| |||||||||||||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
12888439 |
ttttcttccttgcgggtgctgagtttgcggctgttagtaaaacacaggttgtctggtgtttttgtgcggtggttgtttccttctgatccagatctatgtg |
12888340 |
T |
 |
| Q |
134 |
gagg |
137 |
Q |
| |
|
|||| |
|
|
| T |
12888339 |
gagg |
12888336 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 51407192 - 51407283
Alignment:
| Q |
32 |
tgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatcca |
123 |
Q |
| |
|
||||||||| |||| | |||||||||||||| | ||||||||| |||| |||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
51407192 |
tgttttctttcttgtgggtgctgagtttgcggttgttagaaaaacacaggttgtctggtgttttagtgtggtggatgtttccttccgatcca |
51407283 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 12888270 - 12888196
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
12888270 |
gtcttcaacggttgggttcgatcagatccttctcatccgattcgactactctgttatctggtggtttgtcgatgt |
12888196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 14792261 - 14792187
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
14792261 |
gtcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcgatgt |
14792187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 3926325 - 3926263
Alignment:
| Q |
207 |
tcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggttt |
269 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
3926325 |
tcaatggttgggttcgatcagaaccttctcatccggttcgactactctgttatctggtggttt |
3926263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 51407363 - 51407429
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt |
271 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
51407363 |
gtcttcaacggttgggttcgatcagaaccttctcatccagttggacta--ctgttatctgatggtttgt |
51407429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 18357273 - 18357186
Alignment:
| Q |
49 |
gtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggagg |
137 |
Q |
| |
|
||||||||||||| || |||| ||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| || |||| ||||| |
|
|
| T |
18357273 |
gtgctgagtttgcagctgttaggaaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccgatccaaatctatgcggagg |
18357186 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 18431534 - 18431621
Alignment:
| Q |
49 |
gtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggagg |
137 |
Q |
| |
|
||||||||||||| || |||| ||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| || |||| ||||| |
|
|
| T |
18431534 |
gtgctgagtttgcagctgttaggaaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccgatccaaatctatgcggagg |
18431621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 18357120 - 18357046
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||||| ||| |||||||||||||| | ||| ||||| ||||| |
|
|
| T |
18357120 |
gtcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcgatgt |
18357046 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 18431687 - 18431761
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||||| ||| |||||||||||||| | ||| ||||| ||||| |
|
|
| T |
18431687 |
gtcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcgatgt |
18431761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 23533373 - 23533308
Alignment:
| Q |
212 |
ggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
|||||| ||| ||||||||||||||| || ||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
23533373 |
ggttggattcgatcataaccttctcacccggttcaagtactctgttatctggtggtttgtcgatgt |
23533308 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 3915334 - 3915276
Alignment:
| Q |
211 |
cggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggttt |
269 |
Q |
| |
|
||||||||||| || | |||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
3915334 |
cggttgggttcgattagaaccttctcatctggttcgactattctgttatctggtggttt |
3915276 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 50589606 - 50589532
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
|||||| | |||||||||| |||| ||||||| || || ||| |||| |||||||||||||| |||||| ||||| |
|
|
| T |
50589606 |
gtcttcgatggttgggttcgatcaaaaccttcccacccggttcgactgctctgttatctggtagtttgtcgatgt |
50589532 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 51056664 - 51056796
Alignment:
| Q |
5 |
gttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtg |
104 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||||||| | |||||||||||||| | |||||| || |||| ||||||||||||||||| ||||| |
|
|
| T |
51056664 |
gttttggtattgtagctgcgacagtgttgttttcttccttacaggtgctgagtttgcggttgttagaacaacacaggttgtctggtgtttttgtatggtg |
51056763 |
T |
 |
| Q |
105 |
gttgtttccttccaatccagatatatgtggagg |
137 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| |
|
|
| T |
51056764 |
gttgtttccttctgatccagatctatgtggagg |
51056796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 25499033 - 25498932
Alignment:
| Q |
36 |
ttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtgga |
135 |
Q |
| |
|
|||||||||||| || |||||||||| || ||||||||| ||| || |||||||||| || ||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
25499033 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctggtgtttatgcgtggtggttgtttccttccgatccatatctatgtgga |
25498934 |
T |
 |
| Q |
136 |
gg |
137 |
Q |
| |
|
|| |
|
|
| T |
25498933 |
gg |
25498932 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 51056861 - 51056935
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| || ||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
51056861 |
gtcttcaacggttgagttcgatcataaccttctcacccgatttgattactatgttatctggtggtttgtcgatgt |
51056935 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 38258847 - 38258783
Alignment:
| Q |
207 |
tcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt |
271 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||| |||||| || |||||||||||||||| |
|
|
| T |
38258847 |
tcaacggttgggttcgatcagaaccttctcatccggttcgactaccctattatctggtggtttgt |
38258783 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 25498865 - 25498791
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||||| ||| |||| |||||| |||||| ||| ||||||||| |||||| ||||||||| ||||| |
|
|
| T |
25498865 |
gtcttcaacggttggtttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgt |
25498791 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 49358718 - 49358685
Alignment:
| Q |
82 |
ttgtctggtgtttttgtgtggtggttgtttcctt |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
49358718 |
ttgtctagtgtttttgtgtggtggttgtttcctt |
49358685 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 49358604 - 49358536
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt |
271 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||| || || ||||||||||||||||||||| |||| |
|
|
| T |
49358604 |
gtcttcaatagttgggttcgatcagaaccttctcgtctgattcgactactctgttatctggtggattgt |
49358536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 20519211 - 20519108
Alignment:
| Q |
34 |
ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg |
133 |
Q |
| |
|
|||||||||||| | |||||||||||||| | ||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
20519211 |
ttttcttccttgtgggtgctgagtttgcggttgttagaaaaacacaagttgtctggagtttttgtgtggtggttgtttccttccgatccagatctatgtg |
20519112 |
T |
 |
| Q |
134 |
gagg |
137 |
Q |
| |
|
|||| |
|
|
| T |
20519111 |
gagg |
20519108 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 38149387 - 38149487
Alignment:
| Q |
37 |
tcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggag |
136 |
Q |
| |
|
||||||||| | |||||||||||||| | || |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
38149387 |
tcttccttgtgggtgctgagtttgcggttgttggaaaaacacatgttgtctggtgtttttgtgtggtggttgtttccttccgatccagatctatatggag |
38149486 |
T |
 |
| Q |
137 |
g |
137 |
Q |
| |
|
| |
|
|
| T |
38149487 |
g |
38149487 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 20519042 - 20518976
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggttt |
269 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
20519042 |
gtcttcaacggttgggttcgatcagaacattctcatccggttcgactactcttttatctggtggttt |
20518976 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 32919437 - 32919487
Alignment:
| Q |
87 |
tggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggagg |
137 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
32919437 |
tggtgcttttgtgtggtggttgtttccttccgatccagatctatgtggagg |
32919487 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 32946800 - 32946903
Alignment:
| Q |
34 |
ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg |
133 |
Q |
| |
|
|||||||||||||| ||||| ||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
32946800 |
ttttcttccttgcgggtgctaagtttgcagctgttagaaaaacacaggttgtctggtgtttttgtgtggtggttgtttccttctgatccaaatctatgtg |
32946899 |
T |
 |
| Q |
134 |
gagg |
137 |
Q |
| |
|
|||| |
|
|
| T |
32946900 |
gagg |
32946903 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 27109875 - 27109801
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt |
277 |
Q |
| |
|
||||||||||||| ||||| |||| ||| ||||||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
27109875 |
gtcttcaacggtttggttcgatcagaacattctcatccggttcgactactctgttatctggtggtttgtcgatgt |
27109801 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 36057685 - 36057791
Alignment:
| Q |
5 |
gttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtg |
104 |
Q |
| |
|
|||||||||| ||| |||| || || |||||||||||||| | ||||||||||||| || ||||||||| ||| |||||||||||||||||||| || |
|
|
| T |
36057685 |
gttttggtattgtagctgcggcggtgctgttttcttccttgtggatgctgagtttgcggctgttagaaaaacacaagttgtctggtgtttttgtgtgatg |
36057784 |
T |
 |
| Q |
105 |
gttgttt |
111 |
Q |
| |
|
||||||| |
|
|
| T |
36057785 |
gttgttt |
36057791 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 36058813 - 36058919
Alignment:
| Q |
5 |
gttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtg |
104 |
Q |
| |
|
|||||||||| ||| |||| || || |||||||||||||| | ||||||||||||| || ||||||||| ||| |||||||||||||||||||| || |
|
|
| T |
36058813 |
gttttggtattgtagctgcggcggtgctgttttcttccttgtggatgctgagtttgcggctgttagaaaaacacaagttgtctggtgtttttgtgtgatg |
36058912 |
T |
 |
| Q |
105 |
gttgttt |
111 |
Q |
| |
|
||||||| |
|
|
| T |
36058913 |
gttgttt |
36058919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 32946969 - 32947027
Alignment:
| Q |
203 |
gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatct |
261 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
32946969 |
gtcttcaacggttgggttcgatcagaaccttctcatccggttcgactactctattatct |
32947027 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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