View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6726_low_18 (Length: 290)

Name: NF6726_low_18
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6726_low_18
NF6726_low_18
[»] chr2 (4 HSPs)
chr2 (1-137)||(5051479-5051610)
chr2 (203-277)||(5051339-5051413)
chr2 (203-271)||(36592861-36592929)
chr2 (37-137)||(36592995-36593095)
[»] chr7 (11 HSPs)
chr7 (17-137)||(15121352-15121472)
chr7 (34-137)||(5892811-5892912)
chr7 (34-137)||(36934323-36934426)
chr7 (203-277)||(5892978-5893052)
chr7 (34-132)||(26199880-26199981)
chr7 (1-135)||(47589127-47589261)
chr7 (203-270)||(36934201-36934268)
chr7 (215-271)||(40074342-40074398)
chr7 (203-277)||(26199735-26199809)
chr7 (203-277)||(47588985-47589059)
chr7 (203-259)||(15121538-15121593)
[»] chr5 (6 HSPs)
chr5 (1-137)||(9436510-9436646)
chr5 (34-126)||(27632083-27632175)
chr5 (37-137)||(36607762-36607862)
chr5 (32-135)||(33758261-33758364)
chr5 (203-277)||(33758121-33758193)
chr5 (203-277)||(9436370-9436444)
[»] chr6 (5 HSPs)
chr6 (34-137)||(22696637-22696740)
chr6 (34-126)||(34502876-34502968)
chr6 (203-271)||(22696503-22696571)
chr6 (203-277)||(34503045-34503119)
chr6 (231-271)||(24045609-24045649)
[»] scaffold0005 (2 HSPs)
scaffold0005 (1-137)||(47268-47404)
scaffold0005 (203-277)||(47470-47544)
[»] chr4 (15 HSPs)
chr4 (1-137)||(14792327-14792463)
chr4 (17-133)||(50589677-50589793)
chr4 (34-137)||(12888336-12888439)
chr4 (32-123)||(51407192-51407283)
chr4 (203-277)||(12888196-12888270)
chr4 (203-277)||(14792187-14792261)
chr4 (207-269)||(3926263-3926325)
chr4 (203-271)||(51407363-51407429)
chr4 (49-137)||(18357186-18357273)
chr4 (49-137)||(18431534-18431621)
chr4 (203-277)||(18357046-18357120)
chr4 (203-277)||(18431687-18431761)
chr4 (212-277)||(23533308-23533373)
chr4 (211-269)||(3915276-3915334)
chr4 (203-277)||(50589532-50589606)
[»] chr3 (7 HSPs)
chr3 (5-137)||(51056664-51056796)
chr3 (36-137)||(25498932-25499033)
chr3 (203-277)||(51056861-51056935)
chr3 (207-271)||(38258783-38258847)
chr3 (203-277)||(25498791-25498865)
chr3 (82-115)||(49358685-49358718)
chr3 (203-271)||(49358536-49358604)
[»] chr8 (4 HSPs)
chr8 (34-137)||(20519108-20519211)
chr8 (37-137)||(38149387-38149487)
chr8 (203-269)||(20518976-20519042)
chr8 (87-137)||(32919437-32919487)
[»] chr1 (5 HSPs)
chr1 (34-137)||(32946800-32946903)
chr1 (203-277)||(27109801-27109875)
chr1 (5-111)||(36057685-36057791)
chr1 (5-111)||(36058813-36058919)
chr1 (203-261)||(32946969-32947027)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 5051610 - 5051479
Alignment:
1 ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt 100  Q
    ||||||||| ||| ||||||||||     |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||    
5051610 ggtggttttagtacaatagttgcg-----gttgttttcttccttgcgtgtgctgagtttgcggctcttagaaaaatacaaattgtctggtgtttttgtgt 5051516  T
101 ggtggttgtttccttccaatccagatatatgtggagg 137  Q
    |||||||||||||||||||||||||| ||||||||||    
5051515 ggtggttgtttccttccaatccagatctatgtggagg 5051479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 5051413 - 5051339
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
5051413 gtcttcaacggttgggttcgatcataaccttctcatccggtttgactactctgttatatggtggtttgttgatgt 5051339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 36592929 - 36592861
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt 271  Q
    ||||||||| ||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||    
36592929 gtcttcaactgttgggttcgatcataaccttctcacccggtttggctactctgttatctggtggtttgt 36592861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 36593095 - 36592995
Alignment:
37 tcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggag 136  Q
    ||||||||| | ||| ||||||||||  | || |||||| |||   |||||||||||||||||||||| |||||||||||  |||||||| |||||||||    
36593095 tcttccttgtgggtgttgagtttgcggttgttggaaaaacacatgctgtctggtgtttttgtgtggtgattgtttccttctgatccagatctatgtggag 36592996  T
137 g 137  Q
    |    
36592995 g 36592995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 15121352 - 15121472
Alignment:
17 tagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttc 116  Q
    |||||||| || ||||| ||||||||||||| |||||||||||||| |||||||||||| | || |||||||||| ||||||||||||| ||||||||||    
15121352 tagttgcggcggtgttggtttcttccttgcgggtgctgagtttgcggctcttagaaaaacataggttgtctggtgcttttgtgtggtggatgtttccttc 15121451  T
117 caatccagatatatgtggagg 137  Q
    | |||||||| ||| ||||||    
15121452 cgatccagatctatatggagg 15121472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 5892811 - 5892912
Alignment:
34 ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg 133  Q
    ||||||||||||||  ||||||||||||| || ||||||||| |||| |||||||||||||||||||||||||  ||||||||| || ||||| ||||||    
5892811 ttttcttccttgcggatgctgagtttgcggctattagaaaaacacaggttgtctggtgtttttgtgtggtggt--tttccttccgattcagatctatgtg 5892908  T
134 gagg 137  Q
    ||||    
5892909 gagg 5892912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 36934426 - 36934323
Alignment:
34 ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg 133  Q
    ||||| |||| ||| |||||||||||||| || ||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||  |||| ||||||    
36934426 ttttcgtcctagcgggtgctgagtttgcggctgttagaaaaacacagtttgtctggtgtttttgtgtggtggatgtttccttccgattaagatctatgtg 36934327  T
134 gagg 137  Q
    ||||    
36934326 gagg 36934323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 5892978 - 5893052
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    |||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| |||||    
5892978 gtcttcaacggttgggttcaatcagaaccttctcatccggttcgattactctgttatctggtggtttgtcgatgt 5893052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 26199981 - 26199880
Alignment:
34 ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagat---tgtctggtgtttttgtgtggtggttgtttccttccaatccagatatat 130  Q
    ||||||||||| |  |||||||||||||| || ||||||||| |||| |   ||||||||||||||||||||||||||||||||||| |||||||| |||    
26199981 ttttcttccttcctggtgctgagtttgcggctgttagaaaaacacagttggttgtctggtgtttttgtgtggtggttgtttccttccgatccagatctat 26199882  T
131 gt 132  Q
    ||    
26199881 gt 26199880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 47589261 - 47589127
Alignment:
1 ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt 100  Q
    |||||||||||||   |||||||| || || |||||||||||| | | ||  ||||||||||||| ||||||||| |||| |||| ||||||||||||||    
47589261 ggtggttttggtactgtagttgcggcggtgctgttttcttcctcgtgggtattgagtttgcgacttttagaaaaacacaggttgtttggtgtttttgtgt 47589162  T
101 ggtggttgtttccttccaatccagatatatgtgga 135  Q
    |||||  |||||||||  |||||| | ||||||||    
47589161 ggtggacgtttccttctgatccaggtctatgtgga 47589127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 36934268 - 36934201
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttg 270  Q
    ||||||||||||||||||| |||| ||||||||||||  ||| ||||||||| |||||||||||||||    
36934268 gtcttcaacggttgggttcgatcagaaccttctcatctggttcgactactctattatctggtggtttg 36934201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 40074342 - 40074398
Alignment:
215 tgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt 271  Q
    ||||||| |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
40074342 tgggttcgatcagaaccttctcatccggttcgactactatgttatctggtggtttgt 40074398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 26199809 - 26199735
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    |||||||| |||||||||| ||||  |||||||||||  ||| ||||||||| |||| ||||||||||| |||||    
26199809 gtcttcaatggttgggttcgatcagtaccttctcatcaggttcgactactctattatttggtggtttgtcgatgt 26199735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 47589059 - 47588985
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||| |||||||| |||| |||| || |||||||||| ||||||||||| ||||||||| || ||||| |||||    
47589059 gtctttaacggttgagttcgatcagaatcttctcatccggtttgactactgtgttatctgatgatttgtcgatgt 47588985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 15121538 - 15121593
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttat 259  Q
    ||||||||||||||| ||| |||| ||||||||||||  ||| ||||||||||||||    
15121538 gtcttcaacggttgg-ttcgatcagaaccttctcatctggttcgactactctgttat 15121593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 9436646 - 9436510
Alignment:
1 ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt 100  Q
    ||||||||||||| |||||||| |  | ||||| ||||||||||||| |||||||||||||| |||||||||||| |||  || ||| ||||||||||||    
9436646 ggtggttttggtacaatagttgtggtggtgttgctttcttccttgcgggtgctgagtttgcggctcttagaaaaacacatgttttctagtgtttttgtgt 9436547  T
101 ggtggttgtttccttccaatccagatatatgtggagg 137  Q
    ||||  ||||||||||| |||||||| ||||||||||    
9436546 ggtgtatgtttccttccgatccagatctatgtggagg 9436510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 27632083 - 27632175
Alignment:
34 ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagat 126  Q
    ||||||| |||||| |||||||||||||| || ||||||||  |||  |||| ||||||||||||||||||||||||||||||| ||||||||    
27632083 ttttctttcttgcgggtgctgagtttgcggctgttagaaaagcacaagttgtttggtgtttttgtgtggtggttgtttccttccgatccagat 27632175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 36607762 - 36607862
Alignment:
37 tcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggag 136  Q
    ||||||||||| ||   ||||||| | || ||||||||| |||| ||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||    
36607762 tcttccttgcgggtatggagtttgtggctgttagaaaaacacaggttgtctgatgtttttgcttggtggttgtttccttccaatccagatttatgtggag 36607861  T
137 g 137  Q
    |    
36607862 g 36607862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 33758364 - 33758261
Alignment:
32 tgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatg 131  Q
    ||||||||| |||| | || ||||||||||| |  ||||||||| |||| |||||||||||||| ||||||||| ||||||||||| |||||||| | ||    
33758364 tgttttctttcttgtgggtactgagtttgcggccgttagaaaaacacaggttgtctggtgttttagtgtggtggatgtttccttccgatccagatctttg 33758265  T
132 tgga 135  Q
    ||||    
33758264 tgga 33758261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 33758193 - 33758121
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||  |||||||||| |||||||| |||||    
33758193 gtcttcaacggttgggttcgatcagaaccttctcatccagttcgacta--ctgttatctgatggtttgtcgatgt 33758121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 9436444 - 9436370
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||| || ||||||||| ||||||||||||  ||| || ||||||||||||| ||||||||| |||||    
9436444 gtcttcaacggctgagttcaatcaaaaccttctcatctggttcgattactctgttatctagtggtttgtcgatgt 9436370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 22696740 - 22696637
Alignment:
34 ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg 133  Q
    |||||||||||||| |||||||||||||| || ||||||||| |||| || |||||||||| |||||||||||||||||||||| |||||||| ||||||    
22696740 ttttcttccttgcgggtgctgagtttgcggctgttagaaaaacacaggttatctggtgtttatgtgtggtggttgtttccttccgatccagatctatgtg 22696641  T
134 gagg 137  Q
    ||||    
22696640 gagg 22696637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 34502876 - 34502968
Alignment:
34 ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagat 126  Q
    |||||||||||||| ||||||||||||||  | |||| |||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||    
34502876 ttttcttccttgcgggtgctgagtttgcggttgttagtaaaacacaggttgtctgttgtttttgtgtggtcgttgtttccttccaatccagat 34502968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 22696571 - 22696503
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt 271  Q
    ||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| ||||||||||||||||    
22696571 gtcttcaacggttgggttcgatcataaccttttcatccggttcgactactctattatctggtggtttgt 22696503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 34503045 - 34503119
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||||| ||| || | |||||||| | || ||| ||||||||||||||||||||||||| ||||||    
34503045 gtcttcaacggttggtttcgataagaaccttctaagcctgttcgactactctgttatctggtggtttgctgatgt 34503119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 24045609 - 24045649
Alignment:
231 cttctcatccagtttgactactctgttatctggtggtttgt 271  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
24045609 cttctcatccggttcgactactctgttatctggtggtttgt 24045649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 47268 - 47404
Alignment:
1 ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt 100  Q
    |||||||||||||   |||  ||| ||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| ||| ||||||  || ||||    
47268 ggtggttttggtactgtagccgcggcgatgatgttttcttccttgcgggtgctgagtttgcgactgttagaaaaacacaggttgcctggtgaattcgtgt 47367  T
101 ggtggttgtttccttccaatccagatatatgtggagg 137  Q
    ||||||||||||||||  |||||||| ||||||||||    
47368 ggtggttgtttccttctgatccagatctatgtggagg 47404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 47470 - 47544
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||||||||| ||||||||  |||||||| ||| ||||||||||||||||||||| |||| |||||    
47470 gtcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcgatgt 47544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 14792463 - 14792327
Alignment:
1 ggtggttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgt 100  Q
    |||||||||||||   |||  ||| ||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| ||| ||||||  || ||||    
14792463 ggtggttttggtactgtagccgcggcgatgatgttttcttccttgcgggtgctgagtttgcgactgttagaaaaacacaggttgcctggtgaattcgtgt 14792364  T
101 ggtggttgtttccttccaatccagatatatgtggagg 137  Q
    ||||||||||||||||  |||||||| ||||||||||    
14792363 ggtggttgtttccttctgatccagatctatgtggagg 14792327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 50589793 - 50589677
Alignment:
17 tagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttc 116  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||| ||||||| | |||  |||| |||||||| ||||||||||||||||||||     
50589793 tagttgcgacgatgttgttttcttccatgcaggtgctgagtttgcgactgttagaaatacacatgttgtttggtgtttatgtgtggtggttgtttccttt 50589694  T
117 caatccagatatatgtg 133  Q
      |||||||||||||||    
50589693 tgatccagatatatgtg 50589677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 12888439 - 12888336
Alignment:
34 ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg 133  Q
    |||||||||||||| |||||||||||||| || |||| |||| |||| |||||||||||||||||| ||||||||||||||||  |||||||| ||||||    
12888439 ttttcttccttgcgggtgctgagtttgcggctgttagtaaaacacaggttgtctggtgtttttgtgcggtggttgtttccttctgatccagatctatgtg 12888340  T
134 gagg 137  Q
    ||||    
12888339 gagg 12888336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 51407192 - 51407283
Alignment:
32 tgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatcca 123  Q
    ||||||||| |||| | ||||||||||||||  | ||||||||| |||| |||||||||||||| ||||||||| ||||||||||| |||||    
51407192 tgttttctttcttgtgggtgctgagtttgcggttgttagaaaaacacaggttgtctggtgttttagtgtggtggatgtttccttccgatcca 51407283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 12888270 - 12888196
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||||||||| |||| | |||||||||||  || |||||||||||||||||||||||||| |||||    
12888270 gtcttcaacggttgggttcgatcagatccttctcatccgattcgactactctgttatctggtggtttgtcgatgt 12888196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 14792261 - 14792187
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||||||||| ||||||||  |||||||| ||| ||||||||||||||||||||| |||| |||||    
14792261 gtcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcgatgt 14792187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 3926325 - 3926263
Alignment:
207 tcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggttt 269  Q
    |||| |||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||    
3926325 tcaatggttgggttcgatcagaaccttctcatccggttcgactactctgttatctggtggttt 3926263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 51407363 - 51407429
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt 271  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||  |||||||||| ||||||||    
51407363 gtcttcaacggttgggttcgatcagaaccttctcatccagttggacta--ctgttatctgatggtttgt 51407429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 18357273 - 18357186
Alignment:
49 gtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggagg 137  Q
    |||||||||||||  || |||| ||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| || |||| |||||    
18357273 gtgctgagtttgcagctgttaggaaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccgatccaaatctatgcggagg 18357186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 18431534 - 18431621
Alignment:
49 gtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggagg 137  Q
    |||||||||||||  || |||| ||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| || |||| |||||    
18431534 gtgctgagtttgcagctgttaggaaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccgatccaaatctatgcggagg 18431621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 18357120 - 18357046
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||||||||| |||| || |||||||||| ||| |||||||||||||| | ||| ||||| |||||    
18357120 gtcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcgatgt 18357046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 18431687 - 18431761
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||||||||| |||| || |||||||||| ||| |||||||||||||| | ||| ||||| |||||    
18431687 gtcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcgatgt 18431761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 23533373 - 23533308
Alignment:
212 ggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    |||||| ||| ||||||||||||||| || |||  | ||||||||||||||||||||||| |||||    
23533373 ggttggattcgatcataaccttctcacccggttcaagtactctgttatctggtggtttgtcgatgt 23533308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 3915334 - 3915276
Alignment:
211 cggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggttt 269  Q
    ||||||||||| || | ||||||||||||  ||| ||||| ||||||||||||||||||    
3915334 cggttgggttcgattagaaccttctcatctggttcgactattctgttatctggtggttt 3915276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 50589606 - 50589532
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    |||||| | |||||||||| |||| ||||||| || || ||| |||| |||||||||||||| |||||| |||||    
50589606 gtcttcgatggttgggttcgatcaaaaccttcccacccggttcgactgctctgttatctggtagtttgtcgatgt 50589532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 51056664 - 51056796
Alignment:
5 gttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtg 104  Q
    ||||||||||  ||| ||||||  |||||||||||||||| |  ||||||||||||||  | |||||| || |||| ||||||||||||||||| |||||    
51056664 gttttggtattgtagctgcgacagtgttgttttcttccttacaggtgctgagtttgcggttgttagaacaacacaggttgtctggtgtttttgtatggtg 51056763  T
105 gttgtttccttccaatccagatatatgtggagg 137  Q
    ||||||||||||  |||||||| ||||||||||    
51056764 gttgtttccttctgatccagatctatgtggagg 51056796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 25499033 - 25498932
Alignment:
36 ttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtgga 135  Q
    ||||||||||||  || |||||||||| || ||||||||| |||  || |||||||||| || ||||||||||||||||||| ||||| || ||||||||    
25499033 ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctggtgtttatgcgtggtggttgtttccttccgatccatatctatgtgga 25498934  T
136 gg 137  Q
    ||    
25498933 gg 25498932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 51056861 - 51056935
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    |||||||||||||| |||| ||||||||||||||| ||  ||||| |||| |||||||||||||||||| |||||    
51056861 gtcttcaacggttgagttcgatcataaccttctcacccgatttgattactatgttatctggtggtttgtcgatgt 51056935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 38258847 - 38258783
Alignment:
207 tcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt 271  Q
    ||||||||||||||| |||| ||||||||||||| ||| |||||| || ||||||||||||||||    
38258847 tcaacggttgggttcgatcagaaccttctcatccggttcgactaccctattatctggtggtttgt 38258783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 25498865 - 25498791
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||||| ||| |||| |||||| |||||| ||| ||||||||| |||||| ||||||||| |||||    
25498865 gtcttcaacggttggtttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgt 25498791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 49358718 - 49358685
Alignment:
82 ttgtctggtgtttttgtgtggtggttgtttcctt 115  Q
    |||||| |||||||||||||||||||||||||||    
49358718 ttgtctagtgtttttgtgtggtggttgtttcctt 49358685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 49358604 - 49358536
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgt 271  Q
    ||||||||  ||||||||| |||| ||||||||| ||   || ||||||||||||||||||||| ||||    
49358604 gtcttcaatagttgggttcgatcagaaccttctcgtctgattcgactactctgttatctggtggattgt 49358536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 20519211 - 20519108
Alignment:
34 ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg 133  Q
    |||||||||||| | ||||||||||||||  | ||||||||| |||  |||||||| ||||||||||||||||||||||||||| |||||||| ||||||    
20519211 ttttcttccttgtgggtgctgagtttgcggttgttagaaaaacacaagttgtctggagtttttgtgtggtggttgtttccttccgatccagatctatgtg 20519112  T
134 gagg 137  Q
    ||||    
20519111 gagg 20519108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 38149387 - 38149487
Alignment:
37 tcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggag 136  Q
    ||||||||| | ||||||||||||||  | || |||||| |||  |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
38149387 tcttccttgtgggtgctgagtttgcggttgttggaaaaacacatgttgtctggtgtttttgtgtggtggttgtttccttccgatccagatctatatggag 38149486  T
137 g 137  Q
    |    
38149487 g 38149487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 20519042 - 20518976
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggttt 269  Q
    ||||||||||||||||||| |||| ||| ||||||||| ||| ||||||||| ||||||||||||||    
20519042 gtcttcaacggttgggttcgatcagaacattctcatccggttcgactactcttttatctggtggttt 20518976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 32919437 - 32919487
Alignment:
87 tggtgtttttgtgtggtggttgtttccttccaatccagatatatgtggagg 137  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||||||||    
32919437 tggtgcttttgtgtggtggttgtttccttccgatccagatctatgtggagg 32919487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 32946800 - 32946903
Alignment:
34 ttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtggttgtttccttccaatccagatatatgtg 133  Q
    |||||||||||||| ||||| |||||||  || ||||||||| |||| |||||||||||||||||||||||||||||||||||  ||||| || ||||||    
32946800 ttttcttccttgcgggtgctaagtttgcagctgttagaaaaacacaggttgtctggtgtttttgtgtggtggttgtttccttctgatccaaatctatgtg 32946899  T
134 gagg 137  Q
    ||||    
32946900 gagg 32946903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 27109875 - 27109801
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatctggtggtttgttgatgt 277  Q
    ||||||||||||| ||||| |||| ||| ||||||||| ||| |||||||||||||||||||||||||| |||||    
27109875 gtcttcaacggtttggttcgatcagaacattctcatccggttcgactactctgttatctggtggtttgtcgatgt 27109801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 36057685 - 36057791
Alignment:
5 gttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtg 104  Q
    ||||||||||  ||| |||| || || |||||||||||||| |  ||||||||||||| || ||||||||| |||  |||||||||||||||||||| ||    
36057685 gttttggtattgtagctgcggcggtgctgttttcttccttgtggatgctgagtttgcggctgttagaaaaacacaagttgtctggtgtttttgtgtgatg 36057784  T
105 gttgttt 111  Q
    |||||||    
36057785 gttgttt 36057791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 36058813 - 36058919
Alignment:
5 gttttggtataatagttgcgacgatgttgttttcttccttgcgagtgctgagtttgcgactcttagaaaaatacagattgtctggtgtttttgtgtggtg 104  Q
    ||||||||||  ||| |||| || || |||||||||||||| |  ||||||||||||| || ||||||||| |||  |||||||||||||||||||| ||    
36058813 gttttggtattgtagctgcggcggtgctgttttcttccttgtggatgctgagtttgcggctgttagaaaaacacaagttgtctggtgtttttgtgtgatg 36058912  T
105 gttgttt 111  Q
    |||||||    
36058913 gttgttt 36058919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 32946969 - 32947027
Alignment:
203 gtcttcaacggttgggttcaatcataaccttctcatccagtttgactactctgttatct 261  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| ||||||||| ||||||    
32946969 gtcttcaacggttgggttcgatcagaaccttctcatccggttcgactactctattatct 32947027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University