View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6726_low_22 (Length: 242)
Name: NF6726_low_22
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6726_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 16365322 - 16365093
Alignment:
| Q |
1 |
taagaaatgaattttctttgttattgtttaatgtgatcaaagaaatgaattgattcgagtatatgtgattttggacttattgtatttagaccatttgatt |
100 |
Q |
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| T |
16365322 |
taagaaatgaattttctttgttattgtttaatctgatcaaagaaatgaattgattcgagtatatgtgattttggacttattgtatttagactatttgatt |
16365223 |
T |
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| Q |
101 |
aatatgttaatctagagtatgcaaactatttcctttacgtattg---tgcaccagaatgaataatgaattttgtggccaagtttgttggagttagttttt |
197 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16365222 |
aatatgttaaactagagtatgcaaactatttcctttacgtattgtgttgcaccagaatgaataatgaattttgtggccaagtttgttggagttagtttt- |
16365124 |
T |
|
| Q |
198 |
aatgcttttgagttcattcagtgttgagattt |
229 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16365123 |
-ctgcttttgagttcattcagtgttgagattt |
16365093 |
T |
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