View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6726_low_25 (Length: 239)

Name: NF6726_low_25
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6726_low_25
NF6726_low_25
[»] chr7 (6 HSPs)
chr7 (26-90)||(17364747-17364811)
chr7 (26-90)||(43941801-43941865)
chr7 (26-90)||(41678921-41678982)
chr7 (97-171)||(41678371-41678445)
chr7 (97-171)||(17364200-17364274)
chr7 (97-171)||(43942339-43942413)
[»] chr6 (4 HSPs)
chr6 (26-90)||(24498223-24498287)
chr6 (26-90)||(12285710-12285775)
chr6 (97-171)||(24497719-24497793)
chr6 (26-90)||(12314066-12314131)
[»] chr5 (13 HSPs)
chr5 (26-90)||(26700777-26700841)
chr5 (26-90)||(26970510-26970574)
chr5 (26-90)||(40690312-40690376)
chr5 (26-90)||(19545546-19545610)
chr5 (26-90)||(25073168-25073234)
chr5 (26-90)||(25131139-25131205)
chr5 (97-171)||(25073705-25073779)
chr5 (97-171)||(25131676-25131750)
chr5 (97-152)||(41309974-41310029)
chr5 (97-171)||(19546132-19546206)
chr5 (99-171)||(26701316-26701388)
chr5 (99-171)||(26971049-26971121)
chr5 (97-171)||(40690859-40690933)
[»] chr1 (5 HSPs)
chr1 (26-90)||(20572432-20572496)
chr1 (26-90)||(27301865-27301929)
chr1 (97-152)||(27301387-27301442)
chr1 (97-151)||(20569858-20569912)
chr1 (97-171)||(26473945-26474019)
[»] chr8 (4 HSPs)
chr8 (26-90)||(18559363-18559427)
chr8 (26-90)||(5660350-5660414)
chr8 (96-171)||(5660841-5660916)
chr8 (100-171)||(18558823-18558894)
[»] chr2 (2 HSPs)
chr2 (26-90)||(26223174-26223238)
chr2 (101-152)||(26223743-26223794)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 17364811 - 17364747
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17364811 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 17364747  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 43941801 - 43941865
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43941801 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 43941865  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 41678982 - 41678921
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||    
T  41678982 catttttatgttttgaaactt---attttgataatagctaaagatggtggcaatggtttgtgtaa 41678921  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 41678445 - 41678371
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||| || || |||| |||| ||| ||||    
T  41678445 tggcggctacgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggtagtttttaaaacgccagaatt 41678371  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 17364274 - 17364200
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||||| ||||| |||| |||| ||| ||||    
T  17364274 tggcggttacgtaaaaactgccgctttaaacattgtggtaggcaaaatttcggcagtttttaaaacgccagaatt 17364200  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 43942339 - 43942413
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    |||||||||||||||||||||| ||||||||  ||||||||| ||||| | ||||| |||| |||| ||| ||||    
T  43942339 tggcggctacgtaaaaactgccactttaaaccttgtggcaggcaaaatatcggcagtttttaaaacgccagaatt 43942413  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 24498287 - 24498223
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24498287 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 24498223  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 12285775 - 12285710
Alignment:
Q  26 catttttatgttttgaaacttgttatttt-gagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  12285775 catttttatgttttgaaacttgttatttttgagaattgctaaagatggtggcaatggtttgtgtaa 12285710  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 24497793 - 24497719
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||| |||| ||| ||||    
T  24497793 tggcggctacgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggcagtttttaaaacgccagaatt 24497719  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 12314131 - 12314066
Alignment:
Q  26 catttttatgttttgaaacttgtta-ttttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    ||||||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||    
T  12314131 catttttatgttttgaaacttgttatttttaagaattgcgaaagatggtggcaatggtttgtgtaa 12314066  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 26700777 - 26700841
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26700777 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 26700841  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 26970510 - 26970574
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970510 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 26970574  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 40690312 - 40690376
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40690312 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggaaatggtttgtgtaa 40690376  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 19545546 - 19545610
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  19545546 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggaaatggtttttgtaa 19545610  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 25073168 - 25073234
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagct--aaagatggtggcaatggtttgtgtaa 90  Q
    ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||    
T  25073168 catttttatgttttgaaacttgttattttgagaattgctaaaaagatggtggcaatggtttatgtaa 25073234  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 25131139 - 25131205
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagct--aaagatggtggcaatggtttgtgtaa 90  Q
    ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||    
T  25131139 catttttatgttttgaaacttgttattttgagaattgctaaaaagatggtggcaatggtttatgtaa 25131205  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 25073705 - 25073779
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| |||| |||| ||| ||||    
T  25073705 tggcggcttcgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggcagtttttaaaacgccagaatt 25073779  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 25131676 - 25131750
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| |||| |||| ||| ||||    
T  25131676 tggcggcttcgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggcagtttttaaaacgccagaatt 25131750  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 41309974 - 41310029
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcag 152  Q
    |||||||||||||||||||||||||||||||| |||||||||  |||||| |||||    
T  41309974 tggcggctacgtaaaaactgccgctttaaacattgtggcaggcgaaatttcggcag 41310029  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 19546132 - 19546206
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    |||||||||||||||||||||||||||||||| |||| ||||  |||||| ||||| |||| |||| ||| ||||    
T  19546132 tggcggctacgtaaaaactgccgctttaaacattgtgccaggcgaaatttcggcagtttttgaaacgccagaatt 19546206  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 26701316 - 26701388
Alignment:
Q  99 gcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||| |||| |||| ||| ||||    
T  26701316 gcggctacgtaaaaactgccgcttttaacattgtggcagacaaaatttcggcagtttttaaaacgccagaatt 26701388  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 26971049 - 26971121
Alignment:
Q  99 gcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    ||||||||||||||||||||||||| |||| ||||||||  ||||||| ||||| |||| |||| ||| ||||    
T  26971049 gcggctacgtaaaaactgccgcttttaacattgtggcagacaaaatttcggcagtttttaaaacgccagaatt 26971121  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 40690859 - 40690933
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    ||||||||||||||||| | | |||||||||| |||||||||  |||||| ||||| |||| |||| ||| ||||    
T  40690859 tggcggctacgtaaaaattcctgctttaaacattgtggcaggcgaaatttcggcagtttttaaaacgccagaatt 40690933  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 20572496 - 20572432
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20572496 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 20572432  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 27301929 - 27301865
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27301929 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 27301865  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 27301442 - 27301387
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcag 152  Q
    ||||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  27301442 tggcggctacgtaaaaactgctgctttaaacattgtggcaggcaaaatttcggcag 27301387  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 20569912 - 20569858
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggca 151  Q
    ||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||    
T  20569912 tggcggctacgtaaaaaatgccgctttaaacattgtggcaggcaaaatttcggca 20569858  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 26473945 - 26474019
Alignment:
Q  97 tggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    |||||||||||||||||||||| ||||||||  ||| ||||| ||||| | ||||| |||| |||| ||| ||||    
T  26473945 tggcggctacgtaaaaactgccactttaaaccttgtagcaggcaaaatatcggcagtttttaaaacgccagaatt 26474019  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 18559427 - 18559363
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18559427 catttttatgttttgaaacttgttattttgagaatagctaaagatagtggcaatggtttgtgtaa 18559363  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 5660350 - 5660414
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  5660350 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcgatggtttgcgtaa 5660414  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 5660841 - 5660916
Alignment:
Q  96 gtggcggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||| |||| || |||||    
T  5660841 gtggcggctacgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggcagtttttaaaacgcctaaatt 5660916  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 18558894 - 18558823
Alignment:
Q  100 cggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcaggtttttaaacaccaaaatt 171  Q
    ||||||| |||||||||||| |||||||| ||||||||| ||||||| ||||| |||| |||| ||| ||||    
T  18558894 cggctacataaaaactgccgttttaaacattgtggcaggcaaaatttcggcagtttttaaaacgccagaatt 18558823  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 26223174 - 26223238
Alignment:
Q  26 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggcaatggtttgtgtaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26223174 catttttatgttttgaaacttgttattttgagaatagctaaagatggtggaaatggtttgtgtaa 26223238  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 26223743 - 26223794
Alignment:
Q  101 ggctacgtaaaaactgccgctttaaacaatgtggcaggaaaaattttggcag 152  Q
    |||||||||||||||||||||||||||| |||||||||  |||||| |||||    
T  26223743 ggctacgtaaaaactgccgctttaaacattgtggcaggcgaaatttcggcag 26223794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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