View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6726_low_28 (Length: 225)

Name: NF6726_low_28
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6726_low_28
NF6726_low_28
[»] chr4 (3 HSPs)
chr4 (1-225)||(43516797-43517022)
chr4 (3-225)||(20543933-20544156)
chr4 (149-223)||(27300015-27300090)
[»] chr7 (2 HSPs)
chr7 (1-225)||(35213481-35213706)
chr7 (3-61)||(26855726-26855784)
[»] chr1 (4 HSPs)
chr1 (1-225)||(13867882-13868107)
chr1 (97-222)||(26510520-26510646)
chr1 (132-225)||(33150843-33150937)
chr1 (3-72)||(5808724-5808793)
[»] chr3 (2 HSPs)
chr3 (1-225)||(40513773-40513998)
chr3 (97-225)||(34829267-34829396)
[»] chr2 (2 HSPs)
chr2 (3-225)||(11196199-11196422)
chr2 (3-202)||(32624226-32624425)
[»] chr5 (1 HSPs)
chr5 (3-225)||(21367987-21368210)
[»] chr6 (1 HSPs)
chr6 (1-61)||(14687075-14687135)
[»] chr8 (2 HSPs)
chr8 (3-193)||(6245008-6245198)
chr8 (138-223)||(9510646-9510732)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 43516797 - 43517022
Alignment:
Q  1 ttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagcattgtg 100  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||| | ||||||| ||||||||| |||||||||    
T  43516797 ttaaggtttccatttttgcttggagattgttatgggataggttgccgactaagaatcatctcctccggcgtggcatcatcgttggcgaggtagcattgtg 43516896  T
Q  101 tgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatg 200  Q
    ||||||||||||| ||||| || ||| || ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  43516897 tgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgctactttcggtactttgtggcattttatcaggtgttggattggaatg 43516996  T
Q  201 tc-ggtgttgatccccttaatattga 225  Q
    || |||| ||||||||||||||||||    
T  43516997 tcaggtgctgatccccttaatattga 43517022  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 20544156 - 20543933
Alignment:
Q  3 aaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagcattgtgtg 102  Q
    ||||||||||||||| ||||| |||| || || |||||||||||||||||||| ||||| || ||||| | ||| ||||  |||||| ||    ||||||    
T  20544156 aaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgagacaagtatgtgtg 20544057  T
Q  103 ttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgtc 202  Q
    | || |||||| | |||| ||||  | | |||||||||||||| || ||||| ||||| ||| ||||||||||  ||||||||| |||||| ||||||||    
T  20544056 tcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtc 20543957  T
Q  203 -ggtgttgatccccttaatattga 225  Q
     |||| ||| ||| ||||||||||    
T  20543956 aggtgctgacccctttaatattga 20543933  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 27300090 - 27300015
Alignment:
Q  149 ttgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgtc-ggtgttgatccccttaatatt 223  Q
    |||||| |||||||||||||||||||| | |||||| |||||||| |||||  | |||||||| |||| |||||||    
T  27300090 ttgcgccactttcggtacattgtggcattatatcagatgttggatcggaataccaggtgttgacccccctaatatt 27300015  T

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Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35213706 - 35213481
Alignment:
Q  1 ttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagcattgtg 100  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||  |||  | ||||||  |||||||||||||||||||    
T  35213706 ttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggcatcattgttggcgaggcagcattgtg 35213607  T
Q  101 tgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatg 200  Q
    ||||||||||||| |||||||||||| || ||| ||||||||||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||||||||    
T  35213606 tgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggcattttgtcaggtgttggattggaatg 35213507  T
Q  201 tc-ggtgttgatccccttaatattga 225  Q
    || |||||||||||||||||||||||    
T  35213506 tcaggtgttgatccccttaatattga 35213481  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 26855784 - 26855726
Alignment:
Q  3 aaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatct 61  Q
    ||||||||||||||| ||||| |||| || || ||||||||||||||||||||||||||    
T  26855784 aaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatct 26855726  T

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Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 13867882 - 13868107
Alignment:
Q  1 ttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagcattgtg 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||  |||| |  |||||  |||||||||||||||||||    
T  13867882 ttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggtatcattgttggcgaggcagcattgtg 13867981  T
Q  101 tgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatg 200  Q
    ||||||||||||  |||||||||||| || ||||||||||||| ||||||| |||||||| ||||| || ||||| ||| ||||||||||||||||||||    
T  13867982 tgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgctacttttggtactttatggcattttgtcaggtgttggattggaatg 13868081  T
Q  201 tc-ggtgttgatccccttaatattga 225  Q
    || |||| ||||||||||||||||||    
T  13868082 tcaggtgctgatccccttaatattga 13868107  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 26510520 - 26510646
Alignment:
Q  97 tgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattgg 196  Q
    |||||||||| || ||| ||| || ||||| |||  |||| || ||||| ||||| || | ||||||||||||||||||   |||||||| |||||| ||    
T  26510520 tgtgtgttacaggatgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcgg 26510619  T
Q  197 aatgtc-ggtgttgatccccttaatat 222  Q
    |||||| |||||||| ||| |||||||    
T  26510620 aatgtcaggtgttgacccctttaatat 26510646  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 33150937 - 33150843
Alignment:
Q  132 tctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgtc-ggtgttgatccccttaatattga 225  Q
    |||||||||||||| || ||||| ||||| ||  ||||||||||  ||||||||| |||||| |||||||| ||||  || ||||||||||||||    
T  33150937 tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattga 33150843  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 5808793 - 5808724
Alignment:
Q  3 aaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcg 72  Q
    |||||||| || ||| ||||| | ||||| || || |||||||||||||||||| |||| ||||||||||    
T  5808793 aaggtttctatctttgcttggcggttgttgcgagacaggttgccgactaagaataatcttctgaggcgcg 5808724  T

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Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40513773 - 40513998
Alignment:
Q  1 ttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagcattgtg 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||  |||| |  |||||| | || ||||||||||||||    
T  40513773 ttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttcttcggcgtggtatcatcgtcggtgaggcagcattgtg 40513872  T
Q  101 tgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatg 200  Q
    |||| | |||||  |||||||||||| ||  |||||||||||| |||||||  ||||||| ||||| || ||||| ||| ||||||||||||||||||||    
T  40513873 tgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcctacttttggtactttatggcattttgtcaggtgttggattggaatg 40513972  T
Q  201 tc-ggtgttgatccccttaatattga 225  Q
    ||  ||| ||||||||||||||||||    
T  40513973 tcatgtgctgatccccttaatattga 40513998  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 34829396 - 34829267
Alignment:
Q  97 tgtgtgttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattgg 196  Q
    |||||||||| |||||| ||| || ||||| |||  |||| || ||||| ||||| || |||||| |||||||||||||   |||||||| |||||| ||    
T  34829396 tgtgtgttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcgg 34829297  T
Q  197 aatgtc-ggtgttgatccccttaatattga 225  Q
    |||||| |||||| | ||| ||||||||||    
T  34829296 aatgtcaggtgttaacccctttaatattga 34829267  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 11196422 - 11196199
Alignment:
Q  3 aaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagcattgtgtg 102  Q
    ||||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||||| || ||||| | ||| |||| |||||||||||   ||||||    
T  11196422 aaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcagttatgtgtg 11196323  T
Q  103 ttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgtc 202  Q
    |||| |||||| | ||||||||| |||| |||||||||||||| || ||||| ||||| ||| ||||||||||  ||||||||| ||||||  |||||||    
T  11196322 ttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcagaatgtc 11196223  T
Q  203 -ggtgttgatccccttaatattga 225  Q
     ||||| || | ||||||||||||    
T  11196222 aggtgtcgacctccttaatattga 11196199  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 32624425 - 32624226
Alignment:
Q  3 aaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagcattgtgtg 102  Q
    |||||||||||||||  |||| |||| ||  | |||||||||||||||||||| ||||| || ||||| | ||| ||||  |||||||||    ||||||    
T  32624425 aaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgaggcatgtatgtgtg 32624326  T
Q  103 ttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgtc 202  Q
    | || || ||| | |||| ||||  | | |||||||||||||| |||||||| ||||| ||| ||||||||||  ||||||||| |||||||||||||||    
T  32624325 tcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattggaatgtc 32624226  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 21367987 - 21368210
Alignment:
Q  3 aaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggca-gcattgtgt 101  Q
    ||||||||||||||||||||| |||| ||  | |||||||||||||||||||| |||||||| ||||| | ||| ||||  ||||||||| | | | |||    
T  21367987 aaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgtggcataatcaacggcgaggcatgtaat-tgt 21368085  T
Q  102 gttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgt 201  Q
    || || |||||| | |||| ||||  | | ||| || | ||||| |||||||| ||||| ||| ||||||||||  ||||||||| |||||| |||||||    
T  21368086 gtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgt 21368185  T
Q  202 c-ggtgttgatccccttaatattga 225  Q
    | |||| ||| || |||||||||||    
T  21368186 caggtgctgaccctcttaatattga 21368210  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14687075 - 14687135
Alignment:
Q  1 ttaaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatct 61  Q
    ||||||||||||||||| ||||| |||| || || ||||||||||||||||||||||||||    
T  14687075 ttaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatct 14687135  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 6245198 - 6245008
Alignment:
Q  3 aaggtttccattttttcttggagattgttacgggataggttgccgactaagaatcatctcctgaggcgcgacatcatcattggcgaggcagcattgtgtg 102  Q
    |||||||| || ||| ||||| ||||| | || |||||||||| |||||||||| |||| |||||||||| | | |||  ||  || ||||| || ||||    
T  6245198 aaggtttctatctttgcttggcgattgatgcgagataggttgctgactaagaataatcttctgaggcgcggcgtgatcgatgctgaagcagcgttatgtg 6245099  T
Q  103 ttactgggtgcagcatggcagagtttgcttctcatttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggat 193  Q
    || | || ||| |||||| |||||   |  | || |||||| | |||||||| ||||||||||||||||||||   |||||||||||||||    
T  6245098 ttgcaggttgcggcatggaagagtccacgacacacttatttcttcattgcgccactttcggtacattgtggcatcatatcaggtgttggat 6245008  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 9510732 - 9510646
Alignment:
Q  138 ttatttatacattgcgctactttcggtacattgtggcactttatcaggtgttggattggaatgtc-ggtgttgatccccttaatatt 223  Q
    |||||| | |||||||| |||||| |||||||||||||   ||||||||||||||| |||||  | |||||||| |||| |||||||    
T  9510732 ttatttcttcattgcgccactttcagtacattgtggcatcatatcaggtgttggatcggaataccaggtgttgacccccctaatatt 9510646  T

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