View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6726_low_29 (Length: 212)
Name: NF6726_low_29
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6726_low_29 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 38220095 - 38220298
Alignment:
| Q |
8 |
tagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgat |
107 |
Q |
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| T |
38220095 |
tagatcacataaccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgat |
38220194 |
T |
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| Q |
108 |
actcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaaca |
207 |
Q |
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| T |
38220195 |
actcaacctgaaacaa-agaaatccatattgctttactatataatacccaacattggattagtgttacatttcagagttaaatcgagattgagacaaaca |
38220293 |
T |
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| Q |
208 |
aacta |
212 |
Q |
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||||| |
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| T |
38220294 |
aacta |
38220298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 38242950 - 38243143
Alignment:
| Q |
8 |
tagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgat |
107 |
Q |
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| T |
38242950 |
tagatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgat |
38243049 |
T |
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| Q |
108 |
actcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaa |
205 |
Q |
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| T |
38243050 |
actcaatctgaaacaa-agaaatccatgttgct---cactatgatacccaacaatgggctagtgttacatttaagagttaaatcgagattgagacaaa |
38243143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 38237975 - 38238090
Alignment:
| Q |
8 |
tagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgat |
107 |
Q |
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| T |
38237975 |
tagatcatatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgat |
38238074 |
T |
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| Q |
108 |
actcaacctgaaacaa |
123 |
Q |
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| T |
38238075 |
actcattctgaaacaa |
38238090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 38226436 - 38226556
Alignment:
| Q |
8 |
tagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgat |
107 |
Q |
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||||||||||||||||||||||| | |||||||||| |||||||||||| |||||||||||||| || ||||||| |||| ||| ||||||||||||| |
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| T |
38226436 |
tagatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgat |
38226535 |
T |
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| Q |
108 |
actcaacctgaaacaattaaa |
128 |
Q |
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||||| ||||||||| |||| |
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| T |
38226536 |
actcagtctgaaacaaataaa |
38226556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 38214063 - 38214187
Alignment:
| Q |
14 |
acatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaa |
113 |
Q |
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||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||| ||||| | |||||| || ||||||||||||||||||| |
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| T |
38214063 |
acatagccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaa |
38214162 |
T |
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| Q |
114 |
cctgaaacaattaaaatccatattgct |
140 |
Q |
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| T |
38214163 |
cctgaaacaa--aaaatccatgttgct |
38214187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 38253303 - 38253418
Alignment:
| Q |
8 |
tagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgat |
107 |
Q |
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||||||||||||||||| ||||| | |||||||||| |||| || ||||||||||| |||||||| ||||| || | | || |||| |||| ||||| || |
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| T |
38253303 |
tagatcacatagccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcat |
38253402 |
T |
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| Q |
108 |
actcaacctgaaacaa |
123 |
Q |
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| T |
38253403 |
actcaacctgaaacaa |
38253418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 38248176 - 38248264
Alignment:
| Q |
34 |
tgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
123 |
Q |
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|||||||||| |||| |||||||||||||| |||||||| |||| || | |||| |||| |||||||| |||||||||||||||||||| |
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| T |
38248176 |
tgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaacaa |
38248264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 17454532 - 17454647
Alignment:
| Q |
8 |
tagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgat |
107 |
Q |
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||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||| ||||| |||| |||| ||||||||||||| |
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| T |
17454532 |
tagatcacatagccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaacttgat |
17454631 |
T |
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| Q |
108 |
actcaacctgaaacaa |
123 |
Q |
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|||||| ||||||||| |
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| T |
17454632 |
actcaatctgaaacaa |
17454647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 17433453 - 17433568
Alignment:
| Q |
8 |
tagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgat |
107 |
Q |
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||||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||||||| | |||| ||||| | || |||| ||||||||||||| |
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| T |
17433453 |
tagatcacatatccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaacttgat |
17433552 |
T |
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| Q |
108 |
actcaacctgaaacaa |
123 |
Q |
| |
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|||||| ||||||||| |
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| T |
17433553 |
actcaatctgaaacaa |
17433568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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