View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6726_low_3 (Length: 669)
Name: NF6726_low_3
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6726_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 653
Target Start/End: Complemental strand, 12274032 - 12273407
Alignment:
| Q |
9 |
gacatcaactgggacaggtaactcaaaataacaataactaccttcacctctattttttgtcttttacattactcaactgacacaccacatacacatataa |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |
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| T |
12274032 |
gacatcaactgggacaggtaactcaaaataacaataactaccttcacctctattttttgtctttaacattactcaaccgacacaccacata------taa |
12273939 |
T |
|
| Q |
109 |
gtgttatataggtgttggacaccggtttaaagac-----------attaaaaaacaattttatttagactgtcttgtccgacacgtgtcctttgcgtcag |
197 |
Q |
| |
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||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12273938 |
gtgttatataggtgtcagacacatgtttaaagaccacccaagtacattaaaaaacaattttatttagactgtcttgtccgacacgtatcctttgcgtcag |
12273839 |
T |
|
| Q |
198 |
acactgcaacaacatgcataatctaaacgtgtctgtgtttcgtagctagctgcatgtttggaatcacggcgagtcaattcaattgtatacgctattttca |
297 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
12273838 |
acactgcaacaacatgcatagtctaaacgtgtctgtgcttcgtagctagctgcatgtttggaatcacggcgagtcaatccaattgtatatgctattttca |
12273739 |
T |
|
| Q |
298 |
ttggttatcctagacaataagacgaaaagaacaatgtcataagttgttttcataagttattca--gtctcacaaaagttatttcagtggataagcttaaa |
395 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
12273738 |
ttggttatcctagacaataagccgaaaagaacaatgtcataagttgttttcataagttattcacagtctc-------ttatttcagtggataagcttaaa |
12273646 |
T |
|
| Q |
396 |
caagccaatcctagcaggcccataagattctatggagtacgacagagtgctaagtaaagtttgatcgatgtttattttaaccttaattgaagcgcattaa |
495 |
Q |
| |
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|||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12273645 |
caagtcattcccagcaggcccataagatt-------------------gctaagtaaagtttgatcgatgtttattttaaccttaattgaagcgcattaa |
12273565 |
T |
|
| Q |
496 |
cctcatgtccaatcacttgattatataatctctattttaggacgctgaaaagttaaaagttggccttgagctaagtattttttagagtttccctaattat |
595 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12273564 |
cctcgtgtccaatcacttgattatataatctctattttaggacgctgaaaagttaaaagttggccttgagctaagtattttttagagtttccctaattat |
12273465 |
T |
|
| Q |
596 |
tattattattttgaaaattttgtaattaggttggataagaccaggttccacatcattg |
653 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12273464 |
tattattattttgaaaattttgtaattaggttggataagaccaggttccacatcattg |
12273407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 355
Target Start/End: Original strand, 16451179 - 16451208
Alignment:
| Q |
326 |
gaacaatgtcataagttgttttcataagtt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
16451179 |
gaacaatgtcataagttgttttcataagtt |
16451208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 38648450 - 38648506
Alignment:
| Q |
359 |
cagtctcacaaaagttatttcagtggataagcttaaacaagccaatcctagcaggcc |
415 |
Q |
| |
|
||||||||||||| |||| ||||| ||||| |||||| |||||||||||| |||||| |
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|
| T |
38648450 |
cagtctcacaaaacttatgtcagtagataatcttaaataagccaatcctaacaggcc |
38648506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 355
Target Start/End: Complemental strand, 32840995 - 32840966
Alignment:
| Q |
326 |
gaacaatgtcataagttgttttcataagtt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
32840995 |
gaacaatgtcataagttgttttcataagtt |
32840966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 355
Target Start/End: Complemental strand, 9559549 - 9559519
Alignment:
| Q |
325 |
agaacaatgtcataagttgttttcataagtt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
9559549 |
agaacaatgtcataagttgttttcataagtt |
9559519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 355
Target Start/End: Original strand, 41535442 - 41535471
Alignment:
| Q |
326 |
gaacaatgtcataagttgttttcataagtt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
41535442 |
gaacaatgtcataagttgttttcataagtt |
41535471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 44797979 - 44798036
Alignment:
| Q |
359 |
cagtctcacaaaagttatttcagtggataagcttaaacaagccaatcctagcaggccc |
416 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||| ||||||||| | ||||||| |
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|
| T |
44797979 |
cagtctcacaaaacttatgtcagtagataagcttaaatcagccaatccaaacaggccc |
44798036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 355
Target Start/End: Original strand, 37389244 - 37389273
Alignment:
| Q |
326 |
gaacaatgtcataagttgttttcataagtt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
37389244 |
gaacaatgtcataagttgttttcataagtt |
37389273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 1432576 - 1432661
Alignment:
| Q |
326 |
gaacaatgtcataagttgttttcataagttatt-----cagtctcacaaaagttatttcagtggataagcttaaacaagccaatcc |
406 |
Q |
| |
|
||||||||||||| | | |||||||||||| || ||||||||||||| |||| || ||||||||||| ||| |||||||||| |
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| T |
1432576 |
gaacaatgtcatacgctattttcataagttcttccaaacagtctcacaaaatttatgtcggtggataagctcaaataagccaatcc |
1432661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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