View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6726_low_6 (Length: 454)
Name: NF6726_low_6
Description: NF6726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6726_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 55342069 - 55342482
Alignment:
| Q |
18 |
acatcaagcagaaatattacaaaagaaaaggctagacaaagaaactcatagtaacaagttctcgaaacaatccaaggcggtgatgcttgaagcatgagaa |
117 |
Q |
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| T |
55342069 |
acatcaagcagaaatattacaaaagaaaatgctagacaaagaaactcatagtaacaagttctcgaaacaatccaaggcggtgatgcttgcagcatgagaa |
55342168 |
T |
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| Q |
118 |
gatatgaaatccaaggagtatacatgtaattaactccaatatgatgtgcaaactcatcattcactgcattaaagtgcaagatggacttgagcatataaag |
217 |
Q |
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| T |
55342169 |
gatatgaaatccaaggagtatacatgtagttaactccaatatgatgtgcaaactcatcattcactgcattaaagtgcaagatggacttgagcatataaag |
55342268 |
T |
|
| Q |
218 |
aaaagacaaggtggctgcaatgagtactgcaagacaccaaagtaatagataagcaacagaaggcatgaaattaaatccatgccaaagagtttgtgattca |
317 |
Q |
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| T |
55342269 |
aaaagacaaggtggctgcaatgagtactgcaagacaccaaagtaatagataagcaacagaaggcatgaaattaaatccatgccaaagagtttgtgattca |
55342368 |
T |
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| Q |
318 |
ttgttatgttcacttaaactcttccatagcaaagcttgagcaccaaaggaaacacaaatgaaaaagtagcctgcatggatcttagttaagaatggttgtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55342369 |
ttgttatgttcacttaaactcttccatagcaaagcttgagcaccaaaggaaacacaaatgaaaaagtagcctgcatggatcttagttaagaatggttgtg |
55342468 |
T |
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| Q |
418 |
actgtgaatgtgat |
431 |
Q |
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| T |
55342469 |
actgtgaatgtgat |
55342482 |
T |
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