View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6727_high_25 (Length: 211)

Name: NF6727_high_25
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6727_high_25
NF6727_high_25
[»] chr6 (1 HSPs)
chr6 (121-191)||(34704271-34704341)
[»] chr5 (1 HSPs)
chr5 (24-110)||(34509166-34509252)
[»] chr1 (2 HSPs)
chr1 (24-122)||(44619724-44619822)
chr1 (121-165)||(38506200-38506244)
[»] chr2 (1 HSPs)
chr2 (121-160)||(16965399-16965438)
[»] chr4 (1 HSPs)
chr4 (121-191)||(16036390-16036460)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 34704341 - 34704271
Alignment:
Q  121 taagagatgtgttggaaacagaaacaacatggagaagtggatagccgatttacaatgtatggggtatggca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34704341 taagagatgtgttggaaacagaaacaacatggagaagtggatagccgatttacaatgtatggggtatggca 34704271  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 34509166 - 34509252
Alignment:
Q  24 gtgaagaagaagaagaacaaatgaaatgaaatttgtg--gagagaaggtggaattttgtgtgaactgatgaatgttaccaaagagaaat 110  Q
    ||||||||||||||||| |||  ||||||||||||||  |||||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  34509166 gtgaagaagaagaagaagaaa--aaatgaaatttgtgtggagagaaggtggaattttatgtgaaccgatgaatgttgccaaagagaaat 34509252  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 44619724 - 44619822
Alignment:
Q  24 gtgaagaagaagaagaacaaatgaaatgaaatttgtg--gagagaaggtggaattttgtgtgaactgatgaatgttaccaaagagaaatgtaaagccatt 121  Q
    ||||||||||||||||| |||  ||||||||||||||  ||||||||||||||||||  |||||| | |||||||||||||||||||||| | |||||||    
T  44619724 gtgaagaagaagaagaagaaa--aaatgaaatttgtgtggagagaaggtggaattttacgtgaaccgttgaatgttaccaaagagaaatgcagagccatt 44619821  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 38506244 - 38506200
Alignment:
Q  121 taagagatgtgttggaaacagaaacaacatggagaagtggatagc 165  Q
    |||| ||||| |||||||||||||||| |||||||||||| ||||    
T  38506244 taagggatgtattggaaacagaaacaatatggagaagtgggtagc 38506200  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 16965438 - 16965399
Alignment:
Q  121 taagagatgtgttggaaacagaaacaacatggagaagtgg 160  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  16965438 taagggatgtgttggaaacagaaacaacatggagaagtgg 16965399  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 16036460 - 16036390
Alignment:
Q  121 taagagatgtgttggaaacagaaacaacatggagaagtggatagccgatttacaatgtatggggtatggca 191  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||  |||||   || |||||||||||||    
T  16036460 taagggatgtgttggaaatagaaacaatatggagaagtggatagctaatttattttgcatggggtatggca 16036390  T

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