View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_high_4 (Length: 572)
Name: NF6727_high_4
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_high_4 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Complemental strand, 8189929 - 8189385
Alignment:
| Q |
8 |
atgaatgacagtaacttacgcagtggcaaaacctttctcattttgtttttgcactgtttcacttatggatgctctaatggatgccccctactttggcacc |
107 |
Q |
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| T |
8189929 |
atgaatgacagtaacttacgcagtggcaacacctttctcattttgtttttgcactgtttcacttatggatgctccaatggatgccccctactttggcacc |
8189830 |
T |
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| Q |
108 |
taacattgtacctcctgttgtgttgccgaccttttcacccaatgttttggatgatcatgacaataccaaagttgaggtgtctccatttgaggtttcacct |
207 |
Q |
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| T |
8189829 |
taacattgtacctcctgttgtgttgccgaccttttcacccaatgttttggatgatcatgacaataccaaagttgaggtgtctccatttgaggtttcacct |
8189730 |
T |
|
| Q |
208 |
ccagttgttgcatcagttgtttctattgatcatcgagctcaatttaattctaaaagaaagttttcaacactggcagagttgttgatgtgggttcgagaag |
307 |
Q |
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| T |
8189729 |
ccagttgttgcatcagttgtttctattgatcatcgagctcaatttaattctaaaagaaagttttcaacactggcaaagttgttgatgtgggttcgagaag |
8189630 |
T |
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| Q |
308 |
aagtaaggaagctagtctttttaacctttatcgaaaagttagataaccgtgaaaatgccagaaatgcatttgttatattgatatgaagaggaagttcata |
407 |
Q |
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| T |
8189629 |
aagtaaggaagctagtctttttaacctttatcgaaaagttagataaccgtgaaaatgccagaaatgcatttgttatattgatatgaagaggaagttcata |
8189530 |
T |
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| Q |
408 |
tatcgagtacaagaagttgtccaagtgtaagatatctagtttggtgaaatacgagtgtccatttcgtgtgagaggttatttgttgcttagagccttaaag |
507 |
Q |
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| T |
8189529 |
tatcgagtacaagaagttgtccaagtgtaagatatctagttcggtgaaatacgagtgtccgtttcgtgtgagaggttatttgttgcttagagccttaaag |
8189430 |
T |
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| Q |
508 |
ttggtaacagaacacacaaacataagatgacagttgagttgaaag |
552 |
Q |
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| T |
8189429 |
ttggtaacagaacacacaaacataagatgacagttgagttgaaag |
8189385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 393 - 491
Target Start/End: Original strand, 10349356 - 10349454
Alignment:
| Q |
393 |
aagaggaagttcatatatcgagtacaagaagttgtccaagtgtaagatatctagtttggtgaaatacgagtgtccatttcgtgtgagaggttatttgtt |
491 |
Q |
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| T |
10349356 |
aagaggaggttcatatatcgggtacaagaagttgtccgggcgtaagatatatggtttggtgaaatgtgagtgtccgttttctgtgagaggttatttgtt |
10349454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 18179 - 18292
Alignment:
| Q |
367 |
agaaatgcatttgttatattgatatg---aagaggaagttcatatatcgagtacaagaagttgtccaagtgtaagatatctagtttggtgaaatacgagt |
463 |
Q |
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||||||||| |||||||| ||||||| || | || |||| |||| ||||||||||||||||| |||| |||||||||| | | |||||||| |||| |
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| T |
18179 |
agaaatgcaattgttatagtgatatgtgaaacatgaggttcctataccgagtacaagaagttgtacaagcataagatatctggctcggtgaaatgtgagt |
18278 |
T |
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| Q |
464 |
gtccatttcgtgtg |
477 |
Q |
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| T |
18279 |
gtctatttcgtgtg |
18292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 40339095 - 40338985
Alignment:
| Q |
54 |
ttttgcactgtttcacttatggatgctctaatggatgccccc--tactttggcacctaacattgtacctcctgttgtgttgccgaccttttcacccaatg |
151 |
Q |
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|||| |||||||||| ||||||||||| || | ||||| | |||||||||||||||||||| ||||| |||| |||||||||| ||||||| | | |
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| T |
40339095 |
ttttacactgtttcaattatggatgcttccattggtgccctccttactttggcacctaacattgaacctcgtgttatgttgccgactgtttcacctgaag |
40338996 |
T |
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| Q |
152 |
ttttggatgat |
162 |
Q |
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| T |
40338995 |
ttttggatgat |
40338985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 492
Target Start/End: Complemental strand, 30758639 - 30758512
Alignment:
| Q |
368 |
gaaatgcatttgttatattgatatg---aagaggaagttcatatatcgagtacaagaagttgtccaagtgtaagatatctagtttggtgaaatacgagtg |
464 |
Q |
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| T |
30758639 |
gaaatgcatttgttacactaatatgtgaaagaggatgttcacatacagagtacaagaatttgtctaagcgtgagatagctagttcggtgaactatgagtg |
30758540 |
T |
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| Q |
465 |
tccatttcgtgtgagaggttatttgttg |
492 |
Q |
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| T |
30758539 |
tctgttttatttgagaggttatttgttg |
30758512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 43239162 - 43239206
Alignment:
| Q |
393 |
aagaggaagttcatatatcgagtacaagaagttgtccaagtgtaa |
437 |
Q |
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| T |
43239162 |
aagaggaagttcctataccgagtacaagaagttgtcgaagcgtaa |
43239206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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