View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_1 (Length: 886)
Name: NF6727_low_1
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_1 |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 363 - 869
Target Start/End: Original strand, 177385 - 177891
Alignment:
| Q |
363 |
gtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattg |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177385 |
gtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaagcaatacgcaaggtttcttgagctcttcaagaaattgcaaattg |
177484 |
T |
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| Q |
463 |
acattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccat |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
177485 |
acattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggagaattcatgatgaagaaaccat |
177584 |
T |
|
| Q |
563 |
ccaacttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctataggcactatc |
662 |
Q |
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| T |
177585 |
ccaacttgatgctaattgtagtgctatcatccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctataggcactatc |
177684 |
T |
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| Q |
663 |
aatgttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgatttatgtatcaagcggactagga |
762 |
Q |
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| T |
177685 |
aatgttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgatttatgtatcaagcggactagga |
177784 |
T |
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| Q |
763 |
tgaccttgcagttggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttgtattcccggcggattttgt |
862 |
Q |
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| T |
177785 |
tgaccttgcaattggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttgtattcccggcggattttgt |
177884 |
T |
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| Q |
863 |
agtgatg |
869 |
Q |
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| T |
177885 |
agtgatg |
177891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 177039 - 177287
Alignment:
| Q |
17 |
catcaaaaaccttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaaccca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177039 |
catcaaaaaccttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaaccca |
177138 |
T |
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| Q |
117 |
aaagggaaagagcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaag |
216 |
Q |
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| T |
177139 |
aaagggaaagagcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaag |
177238 |
T |
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| Q |
217 |
agtttggtctcgaggaggatgatgttgaagtaggtagtgagaaggagct |
265 |
Q |
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| T |
177239 |
agtttgatctcgaggaggatgatgttgaagtaggtagtgagaaggagct |
177287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 363 - 869
Target Start/End: Original strand, 20171006 - 20171512
Alignment:
| Q |
363 |
gtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattg |
462 |
Q |
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||||||| ||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
20171006 |
gtgttgactcaacactttccctatccacatgctccatcaaagaaagaaaaagaaaggcaatacgcaaggtttcttgaactcttcaagaagttacaaattg |
20171105 |
T |
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| Q |
463 |
acattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccat |
562 |
Q |
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|||||||||| ||||||||||||||||||||| || | ||||| || |||||||||||||| |||| ||||||||||| |||| |||||||||||| ||| |
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| T |
20171106 |
acattccattttcggaagccttggagcaaatgtcgtcttatgccaaattcatgaaagacattctttacaagaagaggataattaatgatgaagaaatcat |
20171205 |
T |
|
| Q |
563 |
ccaacttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctataggcactatc |
662 |
Q |
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| T |
20171206 |
ccaactcgatgcaaattgtagtgccatcattcaacgaaggttgcccaagaaagaacaagatccgggaaaagtcactttactggtagctataggcactatt |
20171305 |
T |
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| Q |
663 |
aatgttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgatttatgtatcaagcggactagga |
762 |
Q |
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||||||| || |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||| |
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| T |
20171306 |
catgttggcaaatcactacttgatcttggctcaagcatcaacctcatgcctttgtctgttgccaaaagagttggtgacttgtgtattaagcggactagga |
20171405 |
T |
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| Q |
763 |
tgaccttgcagttggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttgtattcccggcggattttgt |
862 |
Q |
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|||| ||||| |||||||||||||| | ||| ||||||||||||||| || |||||||| || ||||||||||||||| | || ||| ||||||||| |
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| T |
20171406 |
tgactttgcaattggccgataaatcctacacaaaaccattgggaatagcggaggatgtgctagtgaaagttgataaatttttcttttcggtggattttgt |
20171505 |
T |
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| Q |
863 |
agtgatg |
869 |
Q |
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|||||| |
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| T |
20171506 |
ggtgatg |
20171512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 27 - 262
Target Start/End: Original strand, 20170643 - 20170872
Alignment:
| Q |
27 |
cttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaacccaaaagggaaag |
126 |
Q |
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||||| |||||| |||||||||||| |||||| | |||||| || |||||||||||||||||||||| ||||||| |||| ||| |||||| |
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| T |
20170643 |
cttgagacacaaatgggtcaaatggatcaacaattagctcaagtcacccaacaaggaggagcgttcaccaccaacacacaagccaattcaaaag------ |
20170736 |
T |
|
| Q |
127 |
agcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaagagtttggtct |
226 |
Q |
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| T |
20170737 |
aacagtgcaaagccataacaacaaggagtggtaaggtaattggtaaaggtgtaggcgatgacattgaagtggagcagaaggttgttgaagactttgatat |
20170836 |
T |
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| Q |
227 |
cgaggaggatgatgttgaagtaggtagtgagaagga |
262 |
Q |
| |
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||| |||||| || ||| ||||||||||||||||| |
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| T |
20170837 |
cgataaggatggtgatgaggtaggtagtgagaagga |
20170872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 595
Target Start/End: Original strand, 26130847 - 26131070
Alignment:
| Q |
371 |
tcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattgacattcca |
470 |
Q |
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| T |
26130847 |
tcaacacttgccatatccacatgctccaaccaagaaagc-aaagagcggaaatatgcaaggttccttgatattttcaagagattgaaaatcaatattcca |
26130945 |
T |
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| Q |
471 |
ttctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccatccaacttg |
570 |
Q |
| |
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|||||||||||||||||| |||| | | |||||||| ||||| ||| || || |||| ||||||||||| ||||| ||| ||| || |||||| |
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| T |
26130946 |
ttctcggaagccttggagaaaattctgacgtatgcttagttctggaaggaaatcctttataagaagaggaagtacaatgataaagtaacaattcaactta |
26131045 |
T |
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| Q |
571 |
atgctaattgtagtgctatcgtcca |
595 |
Q |
| |
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|||| ||||||||||| ||| |||| |
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| T |
26131046 |
atgcaaattgtagtgcaatcatcca |
26131070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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