View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6727_low_11 (Length: 499)

Name: NF6727_low_11
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6727_low_11
NF6727_low_11
[»] chr8 (2 HSPs)
chr8 (292-484)||(44614662-44614855)
chr8 (15-171)||(44614313-44614470)
[»] chr4 (11 HSPs)
chr4 (285-484)||(9403818-9404020)
chr4 (292-484)||(1994273-1994466)
chr4 (292-484)||(56558732-56558925)
chr4 (292-483)||(20359313-20359505)
chr4 (299-484)||(30454180-30454366)
chr4 (12-171)||(1993926-1994086)
chr4 (15-171)||(56559114-56559271)
chr4 (12-171)||(9404202-9404360)
chr4 (403-484)||(24807920-24808001)
chr4 (109-171)||(20359066-20359128)
chr4 (12-80)||(20358986-20359056)
[»] chr7 (3 HSPs)
chr7 (297-484)||(18789309-18789498)
chr7 (292-467)||(22249404-22249580)
chr7 (12-171)||(22249057-22249217)
[»] chr3 (4 HSPs)
chr3 (295-484)||(3299628-3299818)
chr3 (285-456)||(8961774-8961946)
chr3 (12-171)||(8961434-8961594)
chr3 (12-171)||(3299279-3299439)
[»] scaffold0014 (2 HSPs)
scaffold0014 (300-484)||(8286-8471)
scaffold0014 (12-171)||(8665-8806)
[»] chr2 (2 HSPs)
chr2 (295-484)||(20266415-20266607)
chr2 (12-171)||(20266142-20266302)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 292 - 484
Target Start/End: Original strand, 44614662 - 44614855
Alignment:
Q  292 tttttcagttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaag-aattcaattactttgtcatctaaacaatgaattttg 390  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  44614662 ttttccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttg 44614761  T
Q  391 aaaatgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaatt 484  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44614762 aaaatgaaggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaatt 44614855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 44614313 - 44614470
Alignment:
Q  15 agaatattagatacatggattatatgtgtacttacaactctcatgatacaaat--tagttttattaaaaaagnnnnnnngtttcaatatttttctattct 112  Q
    ||||||||||| ||||||||||||||||||||||||||||| || ||||||||  ||||||||||||||| |       |||||||||||||||||||||    
T  44614313 agaatattagacacatggattatatgtgtacttacaactcttataatacaaatattagttttattaaaaa-ggttttttgtttcaatatttttctattct 44614411  T
Q  113 tacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  44614412 tacaagtcacgttttagaaaataatccaaattcatttccatttcacgtgattttgctaa 44614470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 285 - 484
Target Start/End: Complemental strand, 9404020 - 9403818
Alignment:
Q  285 aggattattttt--cagttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaag-aattcaattactttgtcatctaaacaa 381  Q
    ||||||||||||  ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  9404020 aggattattttttccagttaattagtttaaaaatcgaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaa 9403921  T
Q  382 tgaattttgaaaatgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaa 481  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  9403920 tgaattttgaaaatgaaggaattcattcactttacccaaacaatgaattttgaaaatgaaatgaattcaattgaagcatttgaattccttagaatttcaa 9403821  T
Q  482 att 484  Q
    |||    
T  9403820 att 9403818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 292 - 484
Target Start/End: Original strand, 1994273 - 1994466
Alignment:
Q  292 tttttcagttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaag-aattcaattactttgtcatctaaacaatgaattttg 390  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  1994273 ttttccagttaattagtttaaaaatggaagtaattataagaaataaaatgtagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttg 1994372  T
Q  391 aaaatgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaatt 484  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  1994373 aaaatgaaggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttaaaatttcaaatt 1994466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 292 - 484
Target Start/End: Complemental strand, 56558925 - 56558732
Alignment:
Q  292 tttttcagttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaag-aattcaattactttgtcatctaaacaatgaattttg 390  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  56558925 ttttccagttaattagtttaaaaatggaagtaattataagaaataaaatgtagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttg 56558826  T
Q  391 aaaatgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaatt 484  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||  |||||||||||    
T  56558825 aaaatgaaggaattcattcactttacccaaacaatgaattttgaaaatgaaatgaattcaattgaagcatttgaattccttttaatttcaaatt 56558732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 292 - 483
Target Start/End: Original strand, 20359313 - 20359505
Alignment:
Q  292 tttttcagttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaag-aattcaattactttgtcatctaaacaatgaattttg 390  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| || |||||||||||||||    
T  20359313 ttttccagttaattagtttaaaaatggaagaaattataagaaataaaatttagacaaataaaggaattcaattactttgtcctccaaacaatgaattttg 20359412  T
Q  391 aaaatgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaat 483  Q
    ||||||||||||||||| ||||||| |||| ||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  20359413 aaaatgaaggaattcattcactttatccaaacaaagaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaattttaaat 20359505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 299 - 484
Target Start/End: Complemental strand, 30454366 - 30454180
Alignment:
Q  299 gttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaag-aattcaattactttgtcatctaaacaatgaattttgaaaatga 397  Q
    ||||||| |||| |||||||||| ||||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||| |||  |||||||    
T  30454366 gttaattagttttaaaatggaagtaattataagaaataaaattaaattaaagaaaggaattcaattactttgtcatctaaacaatgattttgaaaaatga 30454267  T
Q  398 aggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaatt 484  Q
    |||||||||| ||||||| |||| ||||||||||| |||||||| | ||||||| ||||||||||||||| ||||| ||||||||||    
T  30454266 aggaattcattcactttatccaaacaatgaattttgaaaatgaacgaaattcaattgaagcatttgaatttcttaggatttcaaatt 30454180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 1993926 - 1994086
Alignment:
Q  12 cgaagaatattagatacatggattatatgtgtacttacaactctcatgatacaaat--tagttttattaaaaaagnnnnnnngtttcaatatttttctat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||  ||||||||||||||| |       ||||||||||||||||||    
T  1993926 cgaagaatattagatacatggattatatgtgtacttacaactcttataatacaaatattagttttattaaaaa-ggttttttgtttcaatatttttctat 1994024  T
Q  110 tcttacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  1994025 tcttacaggtcaagttttagagaataatccaaattcatttccatttcacgtgattttgctaa 1994086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 56559271 - 56559114
Alignment:
Q  15 agaatattagatacatggattatatgtgtacttacaactctcatgatacaaat--tagttttattaaaaaagnnnnnnngtttcaatatttttctattct 112  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||  ||||||||||||||| |       |||||||||||||||||||||    
T  56559271 agaatattagatacatggattatatgtgtacttacaactcttataatacaaatattagttttattaaaaa-ggttttttgtttcaatatttttctattct 56559173  T
Q  113 tacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  56559172 tacatgtcatgttttagataataatccaaattcatttccatttcacgtgattttgctaa 56559114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 9404360 - 9404202
Alignment:
Q  12 cgaagaatattagatacatggattatatgtgtacttacaactctcatgatacaaat--tagttttattaaaaaagnnnnnnngtttcaatatttttctat 109  Q
    |||||||||||||| |||||||||||  |||||||||||||||| || ||||||||  |||||||||| ||||||       ||||||||||||||||||    
T  9404360 cgaagaatattagacacatggattat--gtgtacttacaactcttataatacaaatattagttttattgaaaaagtttttt-gtttcaatatttttctat 9404264  T
Q  110 tcttacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9404263 tcttacaagtcacgttttaaagaataatccaaattcatttccatttcacgtgattttgctaa 9404202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 484
Target Start/End: Complemental strand, 24808001 - 24807920
Alignment:
Q  403 ttcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaatt 484  Q
    ||||| ||||||| |||| ||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||    
T  24808001 ttcattcactttatccaaacaatgaattttaaaaattaagggaattcaattgaagcatttgaaatccttagaatttcaaatt 24807920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 20359066 - 20359128
Alignment:
Q  109 ttcttacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    |||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  20359066 ttcttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaa 20359128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 20358986 - 20359056
Alignment:
Q  12 cgaagaatattagatacatggattatatgtgtacttacaactctcatgatacaa--attagttttattaaa 80  Q
    |||||||||||||| |||||| ||||||||| |||||||||| | || ||||||  |||||||||||||||    
T  20358986 cgaagaatattagacacatgggttatatgtgaacttacaacttttataatacaaatattagttttattaaa 20359056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 297 - 484
Target Start/End: Original strand, 18789309 - 18789498
Alignment:
Q  297 cagttaattggtttaaaaatggaagaaattataagaaataaaa-tttagtcaaagaaag-aattcaattactttgtcatctaaacaatgaattttgaaaa 394  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  18789309 cagttaattagtttaaaaatggaagaaattataagaaataaaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 18789408  T
Q  395 tgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaatt 484  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  18789409 tgaaggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttaaattccttagaatttcaaatt 18789498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 292 - 467
Target Start/End: Original strand, 22249404 - 22249580
Alignment:
Q  292 tttttcagttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaa-gaattcaattactttgtcatctaaacaatgaattttg 390  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  22249404 ttttccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaatgaattcaattactttctcatctaaacaatgaattttg 22249503  T
Q  391 aaaatgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaatt 467  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  22249504 aaaatgaaggaattcattcaatttacccaaacaataaattttaaaaatgaaaggaattcaattgaagcatttgaatt 22249580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 22249057 - 22249217
Alignment:
Q  12 cgaagaatattagatacatggattatatgtgtacttacaactctcatgatacaaat--tagttttattaaaaaagnnnnnnngtttcaatatttttctat 109  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| || ||||||||  |||||||||||||||||       ||||||||||||||||||    
T  22249057 cgaagaatattagacacatggattatatgtgtacttgcaactcttataatacaaatattagttttattaaaaaagtttttt-gtttcaatatttttctat 22249155  T
Q  110 tcttacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  22249156 tcttacaagtcacgttttaaagaataatccaaattcattttcattttacgtgattttgctaa 22249217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 295 - 484
Target Start/End: Original strand, 3299628 - 3299818
Alignment:
Q  295 ttcagttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaag-aattcaattactttgtcatctaaacaatgaattttgaaa 393  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  3299628 ttcagttaattagtttaaaaatggaagaaattataaaaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaa 3299727  T
Q  394 atgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaatt 484  Q
    |||||||||||||| ||||||||| || ||||||||||  |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  3299728 atgaaggaattcattcactttacctaaacaatgaatttagaaaatgaaaggaattcaattgaagcatttgaattccttaaaatttcaaatt 3299818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 285 - 456
Target Start/End: Original strand, 8961774 - 8961946
Alignment:
Q  285 aggattatttttcagttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaag-aattcaattactttgtcatctaaacaatg 383  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||    
T  8961774 aggattttttttcagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatg 8961873  T
Q  384 aattttgaaaatgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaa 456  Q
    ||||||||||||||||||||||||  |||||||||||  |||||||||| |||||||||||||||||| ||||    
T  8961874 aattttgaaaatgaaggaattcatttactttacccaaataatgaattttgaaaatgaaaggaattcaattgaa 8961946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 8961434 - 8961594
Alignment:
Q  12 cgaagaatattagatacatggattatatgtgtacttacaactctcatgatacaaat--tagttttattaaaaaagnnnnnnngtttcaatatttttctat 109  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||       ||||||||||||||||||    
T  8961434 cgaagaatattagacacatggattatatgtgtacttacaactcttataatacaaatattagttttattaaaaaagtttttt-gtttcaatatttttctat 8961532  T
Q  110 tcttacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8961533 tcttacaagtcacgttttagagaataatccaaattcatttccatttcacatgattttgctaa 8961594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 3299279 - 3299439
Alignment:
Q  12 cgaagaatattagatacatggattatatgtgtacttacaactctcatgatacaaat--tagttttattaaaaaagnnnnnnngtttcaatatttttctat 109  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||  || ||||||||||||||       ||||||||||||||||||    
T  3299279 cgaagaatattagacacatggattatatgtgtacttacaactcttataatacaaatattatttttattaaaaaagtttttt-gtttcaatatttttctat 3299377  T
Q  110 tcttacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3299378 tcttacaagtcacgttttaaagaataatccaaattcattttcatttcacatgattttgctaa 3299439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 300 - 484
Target Start/End: Complemental strand, 8471 - 8286
Alignment:
Q  300 ttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaag-aattcaattactttgtcatctaaacaatgaattttgaaaatgaa 398  Q
    |||||| |||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  8471 ttaattagttttaaaatggaagaaattatcagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaa 8372  T
Q  399 ggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaatt 484  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  8371 ggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttcgaatttcaaatt 8286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 8806 - 8665
Alignment:
Q  12 cgaagaatattagatacatggattatatgtgtacttacaactctcatgatacaaatt--agttttattaaaaaagnnnnnnngtttcaatatttttctat 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||   ||||||||||||||||                 ||||   |    
T  8806 cgaagaatattagatacatggattatacgtgtacttacaactctcataatacaaatatgagttttattaaaaaag-----------------tttt---t 8727  T
Q  110 tcttacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8726 tcttacaagtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 8665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 295 - 484
Target Start/End: Original strand, 20266415 - 20266607
Alignment:
Q  295 ttcagttaattggtttaaaaatggaagaaattataagaaataaaatttagtcaaagaaagaat-tcaattactttgtcatctaaacaatgaattttgaaa 393  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  20266415 ttcagttaattagtttaaaaatggaagaatttataagaaataaaatttagtcaaagaaagaaaatcaattactttatcatccaaacaatgaattttgaaa 20266514  T
Q  394 atgaaggaattcatccactttacccaatcaatgaattttaaaaatgaaaggaattcaaatgaagcatttgaattcct--tagaatttcaaatt 484  Q
    |||||||||||||| ||| |  ||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  20266515 atgaaggaattcattcacgtagcccaaacaatgaattttaaaaataaaagaaattcaattgaagcatttgaattccttatagaatttcaaatt 20266607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 20266142 - 20266302
Alignment:
Q  12 cgaagaatattagatacatggattatatgtgtacttacaactctcatgatacaaat--tagttttattaaaaaagnnnnnnngtttcaatatttttctat 109  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||       ||||||||||||||||||    
T  20266142 cgaagaatattagacacatggattatatgtgtacttacaactcttataatacaaatgttagttttattaaaaaagattttt-gtttcaatatttttctat 20266240  T
Q  110 tcttacatgtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 171  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20266241 tctcacaagtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaa 20266302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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