View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_12 (Length: 487)
Name: NF6727_low_12
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 6 - 468
Target Start/End: Complemental strand, 17776298 - 17775838
Alignment:
| Q |
6 |
tgatatgtccatgagactgtgaccttaatggtagaatctcaataaaatgcctaatttgtaggtttggggattatgatcatatatttaataaccctttaaa |
105 |
Q |
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| T |
17776298 |
tgatatgtccatgagactatgaccttaatggtagaatctcaataaaatgcctaatttgtaggtttggggattatgatcatatatttaataaccctttaaa |
17776199 |
T |
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| Q |
106 |
cacattaatgtcatgaaagctttggtctatccagtactacaagtcaagacactagatcaaagttccatgtaaattaataataattacataacataatgtt |
205 |
Q |
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| T |
17776198 |
cacattaatgtcatgaaagctttggtctatccagtactacaagtcaagacactagatcaaagttccatgtaaattaataataattacataacataatgtt |
17776099 |
T |
|
| Q |
206 |
tgaaactttgaaataacatttggaaacgtggaagtgaaccagattccaaaacatagctcaaatatatataattcaactgcaaattccactgtgacacact |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17776098 |
tgaaactttgaaataacatttggaaacgtggaagtgaaccagattccaaaacatagctcaaata--tataattcaactgcaaattccactgtgacacact |
17776001 |
T |
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| Q |
306 |
taggattatattattgtaggcctcttggaatcctaaaatccagtttctattccattctcacagcttctattctactgattttaccaggtttgaatcagtt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17776000 |
taggattatattattgtaggcctcttggaatcctaaaatccagtttctattccattctcacagcttctattctactgattttaccaggtttgaatcagtt |
17775901 |
T |
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| Q |
406 |
gaataatattattaatctaaaatttcaaataaaaacaagcgagcgtgtgaccaaagtctaata |
468 |
Q |
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| T |
17775900 |
gaataatattattaatctaaaatttcaaataaaaacaagcgagcgtgtgaccaaagtctaata |
17775838 |
T |
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