View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6727_low_13 (Length: 437)

Name: NF6727_low_13
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6727_low_13
NF6727_low_13
[»] chr4 (16 HSPs)
chr4 (1-421)||(4154414-4154834)
chr4 (327-421)||(48547002-48547096)
chr4 (319-402)||(42679189-42679272)
chr4 (316-402)||(35292868-35292954)
chr4 (287-421)||(23441466-23441599)
chr4 (318-402)||(25856945-25857028)
chr4 (328-410)||(13204777-13204858)
chr4 (320-402)||(56094389-56094471)
chr4 (328-400)||(47312081-47312153)
chr4 (319-388)||(48685890-48685959)
chr4 (319-402)||(867469-867553)
chr4 (355-409)||(15831874-15831930)
chr4 (91-152)||(23963860-23963921)
chr4 (96-152)||(4622583-4622639)
chr4 (359-395)||(24274144-24274180)
chr4 (319-399)||(51983320-51983400)
[»] chr2 (11 HSPs)
chr2 (318-399)||(33428754-33428835)
chr2 (319-402)||(5188013-5188096)
chr2 (317-402)||(83537-83621)
chr2 (327-410)||(36472455-36472538)
chr2 (320-402)||(1130856-1130938)
chr2 (334-410)||(18704814-18704890)
chr2 (93-152)||(28228403-28228462)
chr2 (319-402)||(10221496-10221579)
chr2 (93-152)||(37883834-37883893)
chr2 (355-392)||(25319125-25319162)
chr2 (317-368)||(931418-931470)
[»] chr8 (18 HSPs)
chr8 (319-402)||(26600833-26600916)
chr8 (315-402)||(39303798-39303885)
chr8 (334-405)||(4606333-4606404)
chr8 (318-421)||(26916309-26916412)
chr8 (327-402)||(43120829-43120904)
chr8 (319-399)||(35170764-35170844)
chr8 (319-402)||(11175317-11175400)
chr8 (93-152)||(12244090-12244149)
chr8 (319-402)||(15175317-15175400)
chr8 (319-402)||(32350798-32350881)
chr8 (319-402)||(32367459-32367542)
chr8 (331-402)||(10839609-10839683)
chr8 (1-69)||(14530865-14530933)
chr8 (1-109)||(32920741-32920849)
chr8 (319-401)||(1823386-1823468)
chr8 (319-401)||(1857831-1857913)
chr8 (1-118)||(14327568-14327685)
chr8 (355-402)||(4187297-4187345)
[»] chr1 (20 HSPs)
chr1 (319-402)||(35307260-35307343)
chr1 (319-421)||(15183864-15183966)
chr1 (299-399)||(48496927-48497028)
chr1 (1-113)||(35356465-35356577)
chr1 (318-402)||(31065215-31065299)
chr1 (319-402)||(11580588-11580671)
chr1 (319-402)||(27458239-27458322)
chr1 (320-402)||(31165616-31165698)
chr1 (346-399)||(49703934-49703987)
chr1 (318-373)||(4080526-4080581)
chr1 (93-152)||(34659515-34659574)
chr1 (320-402)||(2765650-2765732)
chr1 (316-402)||(46798409-46798494)
chr1 (96-152)||(10877530-10877586)
chr1 (318-374)||(15939010-15939066)
chr1 (318-374)||(15939099-15939155)
chr1 (355-399)||(16580596-16580640)
chr1 (318-377)||(15947480-15947539)
chr1 (318-377)||(28292267-28292326)
chr1 (95-152)||(900276-900333)
[»] chr6 (2 HSPs)
chr6 (319-401)||(11751786-11751868)
chr6 (319-402)||(10479774-10479856)
[»] chr3 (8 HSPs)
chr3 (319-400)||(16194348-16194429)
chr3 (327-404)||(22224080-22224157)
chr3 (327-402)||(2757248-2757323)
chr3 (93-152)||(32237870-32237929)
chr3 (327-397)||(8795811-8795881)
chr3 (328-402)||(29306170-29306244)
chr3 (68-152)||(35670568-35670653)
chr3 (326-391)||(39905008-39905073)
[»] chr7 (10 HSPs)
chr7 (318-402)||(47085040-47085124)
chr7 (318-410)||(3839371-3839463)
chr7 (319-399)||(34595890-34595971)
chr7 (326-402)||(38582340-38582416)
chr7 (93-152)||(46918580-46918639)
chr7 (318-390)||(30154450-30154522)
chr7 (93-152)||(19895558-19895617)
chr7 (57-152)||(35562511-35562606)
chr7 (318-402)||(33407127-33407211)
chr7 (193-221)||(35129398-35129426)
[»] scaffold0001 (1 HSPs)
scaffold0001 (319-402)||(508075-508158)
[»] chr5 (7 HSPs)
chr5 (318-410)||(5177373-5177465)
chr5 (337-402)||(994896-994961)
chr5 (316-360)||(14055471-14055515)
chr5 (1-152)||(6074610-6074761)
chr5 (91-153)||(8957385-8957447)
chr5 (1-69)||(13007781-13007849)
chr5 (190-218)||(39452547-39452575)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 4154834 - 4154414
Alignment:
Q  1 tttttcttttgtaattttatcgtcgtagtgcaacgatgttctatttgccgtctttgtgcaacgttgttttgtctttccgtcttgatatattgtttgttcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  4154834 tttttcttttgtaattttatcgtcgtagtgcaacgatgttctgtttgtcgtctttgtgcaacgttgttttgtttttccgtcttaatacattgtttgttcg 4154735  T
Q  101 gttcagattgtcatatcactttttatccaatgcatattcaatcaatgactttttatatttaagcataattaaatataggtcaaattcaccctgcaatctt 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  4154734 gttcagattgtcatatcattttttatccaatgcatattcaatcaatgactttttatattcaagcataattaaatataggtcaaattcaccctgcaat-tt 4154636  T
Q  201 ttaagttagatgtttatagcatgttattaatttaagnnnnnnnngttgaaaattgatcttttnnnnnnnnttgttacaaattgctccttttaagtc--at 298  Q
    |||||||||||||||||||||||||| |||||||||        ||||||||||||||||||        ||||||||||||||||||||||||||  ||    
T  4154635 ttaagttagatgtttatagcatgttaataatttaag-tttttttgttgaaaattgatcttttaaaaaaatttgttacaaattgctccttttaagtcatat 4154537  T
Q  299 atatatacactactaatcatttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaa 398  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4154536 atatatacactactaatcatttttcagtcaacttcgttaaaaagtgtttatgaattatttaacatcgaggtggtaggtccaaaagtgtttatgatatcaa 4154437  T
Q  399 acataatcacttgcgcatatttt 421  Q
    |||||||||| ||| ||||||||    
T  4154436 acataatcacatgcacatatttt 4154414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 48547096 - 48547002
Alignment:
Q  327 caacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataatcacttgcgcatatttt 421  Q
    ||||||||||||||||||| |||  | ||||||||||||||||| ||| |||||| |||||||||| ||||||||| || |||| ||||||||||    
T  48547096 caacttcgttaaaaagtgtctatagactatttaacattgaggtgatagctccaaatgtgtttatgacatcaaacatgataacttacgcatatttt 48547002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 42679189 - 42679272
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||||||||||||||||||||||||||  |  |||||||||| || | |||||||||||||||||||| | |||||||||    
T  42679189 ttttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatagtaggtccaaaagtgtttataacatcaaacat 42679272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 402
Target Start/End: Original strand, 35292868 - 35292954
Alignment:
Q  316 catttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||||| |||||| ||||||||||||||||| |  ||||| ||||||||||||| || ||||||||||| ||| |||||||||    
T  35292868 catttttcagtcaactttgttaaaaagtgtttatggacaatttagcattgaggtggtaagttcaaaagtgtttttgacatcaaacat 35292954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 421
Target Start/End: Original strand, 23441466 - 23441599
Alignment:
Q  287 cttttaagtcata-tatatacactactaatcatttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtg 385  Q
    ||||||||||||| ||||||||| | ||  |||||||||| |||||| |||||||||| |||||  || ||||||||||||| |||||  ||||||| ||    
T  23441466 cttttaagtcataatatatacacgattatccatttttcagtcaactttgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg 23441565  T
Q  386 tttatgatatcaaacataatcacttgcgcatatttt 421  Q
    ||  ||| ||||||||| || |||| ||||||||||    
T  23441566 tt--tgacatcaaacatgattacttacgcatatttt 23441599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 25856945 - 25857028
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||| ||||||||||| |||||| | ||||||| |  |||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  25856945 ttttccagccaacttctttaaaa-gcgtttatggaccatttaacattgaggtggtagatccaaaaatgtttatgacatcaaacat 25857028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 13204777 - 13204858
Alignment:
Q  328 aacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataatcactt 410  Q
    |||||| ||||||| |||||||| || |||||||||||| || |||||| || |||||||||||| |||||||||||| ||||    
T  13204777 aacttccttaaaaa-tgtttatggatcatttaacattgaagtagtaggttcataagtgtttatgacatcaaacataattactt 13204858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 402
Target Start/End: Complemental strand, 56094471 - 56094389
Alignment:
Q  320 tttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||||||||| |||||| ||| ||||  |  |||||||||| || |||||||| ||||||||||||||| |||||||||    
T  56094471 tttcagccaacttcattaaaatgtgcttatagaccatttaacattaagatggtaggttcaaaagtgtttatgacatcaaacat 56094389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 47312081 - 47312153
Alignment:
Q  328 aacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaac 400  Q
    ||||||||||||||||  |||| |||||||||||||||| || |||||| ||||| ||||||| | |||||||    
T  47312081 aacttcgttaaaaagtacttataaattatttaacattgaagttgtaggttcaaaaatgtttataacatcaaac 47312153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 48685959 - 48685890
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgttt 388  Q
    ||||| ||||||||  ||||||||||||||||||| |||||| | ||| ||| ||||||||||| |||||    
T  48685959 ttttcggccaactttattaaaaagtgtttatgaatcatttaatagtgaagtgataggtccaaaactgttt 48685890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 867469 - 867553
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaaca-ttgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||| |||||||||||||||||||||||  | ||||||||| || || |||||||| ||||| |  |||||| |||||||||    
T  867469 ttttcagtcaacttcgttaaaaagtgtttatagactatttaacatttaagatggtaggttcaaaaatacttatgacatcaaacat 867553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 15831930 - 15831874
Alignment:
Q  355 atttaacattgaggtggta--ggtccaaaagtgtttatgatatcaaacataatcact 409  Q
    |||||| ||||||||||||  ||||||||||||||||||| |||||| || ||||||    
T  15831930 atttaatattgaggtggtataggtccaaaagtgtttatgacatcaaatatgatcact 15831874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 23963860 - 23963921
Alignment:
Q  91 tgtttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    ||||||||||||||| ||| ||||||||  ||  |||||||||| ||||||||||| |||||    
T  23963860 tgtttgttcggttcatattatcatatcaacttcgatccaatgcagattcaatcaattacttt 23963921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 4622639 - 4622583
Alignment:
Q  96 gttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    |||||||||||||||||||||   |||  |||||||||| |||||||||| ||||||    
T  4622639 gttcggttcagattgtcatattggtttcgatccaatgcaaattcaatcaacgacttt 4622583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 24274180 - 24274144
Alignment:
Q  359 aacattgaggtggtaggtccaaaagtgtttatgatat 395  Q
    ||||||||||||||| || ||||||||||||||||||    
T  24274180 aacattgaggtggtaagttcaaaagtgtttatgatat 24274144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 51983320 - 51983400
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaa 399  Q
    |||| ||| |||||||||||||| ||||||||||  |||||||||| ||    || |||||||||| ||||||| ||||||    
T  51983320 tttttagctaacttcgttaaaaaatgtttatgaaccatttaacattaagagcatatgtccaaaagtatttatgacatcaaa 51983400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 33428754 - 33428835
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaa 399  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| || ||||||||||||||| ||||||    
T  33428754 tttttcagccaacttcgttaaaaaatgtttacgaatcatttaacattgaggtggtatgttcaaaagtgtttatgacatcaaa 33428835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 5188096 - 5188013
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||||||||||||||||||||||||||  |  || ||||||| || || ||||||||||||||||||||| |||||||||    
T  5188096 ttttcagccaacttcgttaaaaagtgtttatagaccatgtaacattaagatgttaggtccaaaagtgtttatgacatcaaacat 5188013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 402
Target Start/End: Original strand, 83537 - 83621
Alignment:
Q  317 atttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||| |||||||| ||||||| |||||||  |  |||||||||||||||||||||||||||||||||||||  |||||||||    
T  83537 atttttca-ccaacttcattaaaaaatgtttatcgaccatttaacattgaggtggtaggtccaaaagtgtttatgtcatcaaacat 83621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 36472538 - 36472455
Alignment:
Q  327 caacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataatcactt 410  Q
    |||||||||||||||||||| ||| || ||||||||||||||||  || || |||||||||||||| ||||||| |||| ||||    
T  36472538 caacttcgttaaaaagtgttcatggataatttaacattgaggtgagagatctaaaagtgtttatgacatcaaacctaattactt 36472455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 402
Target Start/End: Complemental strand, 1130938 - 1130856
Alignment:
Q  320 tttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||||||||||||||||| ||||| ||| |  |||||||||||| |||||| ||||||||||| |||||| || ||||||    
T  1130938 tttcagccaacttcgttaaaaggtgttcatggaccatttaacattgaagtggtaagtccaaaagtgcttatgacataaaacat 1130856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 18704890 - 18704814
Alignment:
Q  334 gttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataatcactt 410  Q
    ||||||||||||||||| || |||||| ||| || ||||||||||||||||| |||||| | |||||||||| ||||    
T  18704890 gttaaaaagtgtttatggatcatttaatattaagatggtaggtccaaaagtgcttatgacaacaaacataattactt 18704814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 28228403 - 28228462
Alignment:
Q  93 tttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    ||||||||||||||||||||||||||  ||| |||||||||| || ||||||||||||||    
T  28228403 tttgttcggttcagattgtcatatcagctttgatccaatgcagatccaatcaatgacttt 28228462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 10221496 - 10221579
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||||||||||||||||||  || ||||  |  |||||||||| || ||||||||  |||| || ||||||||||||||||    
T  10221496 ttttcagccaacttcgttaaaacatgcttatagaccatttaacattaagatggtaggttaaaaaatgcttatgatatcaaacat 10221579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 37883834 - 37883893
Alignment:
Q  93 tttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    |||||||| |||||||||||||||||  ||| |||||||||| ||  |||||||||||||    
T  37883834 tttgttcgattcagattgtcatatcagctttgatccaatgcagatcaaatcaatgacttt 37883893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 25319162 - 25319125
Alignment:
Q  355 atttaacattgaggtggtaggtccaaaagtgtttatga 392  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  25319162 atttaacattgaggtggaaggtcaaaaagtgtttatga 25319125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 931470 - 931418
Alignment:
Q  317 atttttcagccaacttcgttaaaaa-gtgtttatgaattatttaacattgagg 368  Q
    |||||||||| || ||||||||||| ||||||||| || ||||||||||||||    
T  931470 atttttcagctaatttcgttaaaaaagtgtttatggatcatttaacattgagg 931418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 26600833 - 26600916
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||| || ||||||||||||||||| |||||| |||||||||    
T  26600833 ttttcagccaacttcgttaaaaagtgtttataaacaatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacat 26600916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 402
Target Start/End: Original strand, 39303798 - 39303885
Alignment:
Q  315 tcatttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||||||| ||||||||||||||  | ||||||||| ||||||||||||  |||||||||||||| || |||||| | |||||||    
T  39303798 tcatttttcagtcaacttcgttaaaatatatttatgaatcatttaacattgaaatggtaggtccaaaaatgattatgaaaacaaacat 39303885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 4606404 - 4606333
Alignment:
Q  334 gttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataat 405  Q
    ||||||| ||||||||| || |||||||||||||||| ||| ||||||||| ||||||| |||||| |||||    
T  4606404 gttaaaaggtgtttatggatcatttaacattgaggtgttagatccaaaagtatttatgacatcaaatataat 4606333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 421
Target Start/End: Complemental strand, 26916412 - 26916309
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataatcacttgcgcata 417  Q
    |||||||  |||||||||||||| ||| ||||| |  |||||| ||| ||||||||||| ||||||||||||||| ||||| ||| || |||  ||||||    
T  26916412 tttttcaatcaacttcgttaaaatgtgcttatggaccatttaaaattaaggtggtaggttcaaaagtgtttatgacatcaaccatgattactaacgcata 26916313  T
Q  418 tttt 421  Q
    ||||    
T  26916312 tttt 26916309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 402
Target Start/End: Complemental strand, 43120904 - 43120829
Alignment:
Q  327 caacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||||||| |||||  |||  || |||||||||| || ||||||||||||||||| ||||||||||||||||    
T  43120904 caacttcgttaagaagtggctatagataatttaacattaagatggtaggtccaaaagtgcttatgatatcaaacat 43120829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 35170764 - 35170844
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaa 399  Q
    |||||||| ||||||||||||| ||||||||| |   ||||||||| || ||||| ||||||||| |||||||| ||||||    
T  35170764 ttttcagctaacttcgttaaaatgtgtttatggaccgtttaacattaagatggtaagtccaaaagagtttatgacatcaaa 35170844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 11175317 - 11175400
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||| ||||||||||||||| |||||||  | ||| ||||||| || || ||||| |||||||| |||||| |||||||||    
T  11175317 ttttcagtcaacttcgttaaaaaatgtttatagactatctaacattaagatgataggttcaaaagtgcttatgacatcaaacat 11175400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 12244149 - 12244090
Alignment:
Q  93 tttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    |||||||| |||||||||||||||||  ||| |||||||||| || ||||||||||||||    
T  12244149 tttgttcgattcagattgtcatatcagctttgatccaatgcagatccaatcaatgacttt 12244090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 15175400 - 15175317
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||| ||||||||| |||||||| ||||  || |||||| ||| || |||||||||||||| || |||||| |||||||||    
T  15175400 ttttcagtcaacttcgtcaaaaagtgcttatagatcatttaatattaagatggtaggtccaaaaatgcttatgacatcaaacat 15175317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 32350798 - 32350881
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||| |||||| |||||||||| ||||  |  |||||||||| || || |||||| |||||||||||||| |||||||||    
T  32350798 ttttcagctaacttcattaaaaagtgcttatagaccatttaacattaagatgataggtctaaaagtgtttatgacatcaaacat 32350881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 32367459 - 32367542
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||| |||||| |||||||||| ||||  |  |||||||||| || || |||||| |||||||||||||| |||||||||    
T  32367459 ttttcagctaacttcattaaaaagtgcttatagaccatttaacattaagatgataggtctaaaagtgtttatgacatcaaacat 32367542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 10839609 - 10839683
Alignment:
Q  331 ttcgttaaaaagtgtttatgaattatttaacattga---ggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||||||||||||||||||  ||||| ||||||   ||| |||||||||||||||| ||| | |||||||||    
T  10839609 ttcgttaaaaagtgtttatgaaccatttatcattgaggcggtagtaggtccaaaagtgtctattacatcaaacat 10839683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 14530933 - 14530865
Alignment:
Q  1 tttttcttttgtaattttatcgtcgtagtgcaacgatgttctatttgccgtctttgtgcaacgttgttt 69  Q
    |||| ||||||| | || |||||| ||||||||| ||||| | |||| |||||||||||||||||||||    
T  14530933 ttttccttttgtgaattcatcgtcttagtgcaaccatgttttgtttgtcgtctttgtgcaacgttgttt 14530865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 32920741 - 32920849
Alignment:
Q  1 tttttcttttgtaattttatcgtcgtagtgcaacgatgttctatttgccgtctttgtgcaacgttgttttgtctttccgtcttgatatattgtttgttcg 100  Q
    |||||||||||| ||||  ||||| ||||||||| ||||| | |||| ||||||||||| || ||||||  | ||||| ||||| |    ||||||||||    
T  32920741 tttttcttttgtgatttcgtcgtcttagtgcaacaatgttttgtttgtcgtctttgtgcgaccttgtttgttttttccctcttgtttaggtgtttgttcg 32920840  T
Q  101 gttcagatt 109  Q
    |||||||||    
T  32920841 gttcagatt 32920849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 1823386 - 1823468
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaaca 401  Q
    ||||| ||||||||| |||||||||| |||| ||  ||||||||||  | ||||||||||||| ||| || ||| ||||||||    
T  1823386 ttttcggccaacttcattaaaaagtgcttataaaccatttaacattacgatggtaggtccaaatgtgcttgtgacatcaaaca 1823468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 1857831 - 1857913
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaaca 401  Q
    ||||| ||||||||| |||||||||| |||| ||  ||||||||||  | ||||||||||||| ||| || ||| ||||||||    
T  1857831 ttttcggccaacttcattaaaaagtgcttataaaccatttaacattacgatggtaggtccaaatgtgcttgtgacatcaaaca 1857913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 14327568 - 14327685
Alignment:
Q  1 tttttcttttgtaattttatcgtcgtagtgcaacgatgttctatttgccgtctttgtgcaacgttgttttgtcttt-ccgtcttgatatattgtttgttc 99  Q
    |||| ||||||| ||||  ||||| |||||| ||| |||| | |||| ||||||||||| ||||||||| |||||| || | ||| |  | |||||||||    
T  14327568 ttttccttttgtgatttagtcgtcttagtgcgacgttgttttgtttgtcgtctttgtgcgacgttgttt-gtcttttcccttttgttcaagtgtttgttc 14327666  T
Q  100 ggttcagattgtcatatca 118  Q
    |||||||||||||| ||||    
T  14327667 ggttcagattgtcagatca 14327685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 4187297 - 4187345
Alignment:
Q  355 atttaacattgaggtggtaggtccaa-aagtgtttatgatatcaaacat 402  Q
    ||||||||||||||||| ||||||||  ||||||||||| |||||||||    
T  4187297 atttaacattgaggtggaaggtccaattagtgtttatgacatcaaacat 4187345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 35307343 - 35307260
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||||||||||||||||||||||||||  || |||||||||| || |||||||||||||||||||| ||| |||||||||    
T  35307343 ttttcagccaacttcgttaaaaagtgtttatagatcatttaacattaagatggtaggtccaaaagtgtttttgacatcaaacat 35307260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 421
Target Start/End: Complemental strand, 15183966 - 15183864
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataatcacttgcgcatat 418  Q
    |||| ||||||||||||||||||||| ||||  |  |||||||||| || ||||||||||||||||| |||||| ||||||||| || ||||||||| ||    
T  15183966 tttttagccaacttcgttaaaaagtgcttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacatgattacttgcgcacat 15183867  T
Q  419 ttt 421  Q
    |||    
T  15183866 ttt 15183864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 399
Target Start/End: Original strand, 48496927 - 48497028
Alignment:
Q  299 atatatacactactaatcatt-tttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatca 397  Q
    |||| ||||||| |||||||| |||||| || |||||||||||| | ||||||||  |||||||||||||||||||||| |||||| | |||||||||||    
T  48496927 atatttacactattaatcattatttcagtcagcttcgttaaaaaatatttatgaaccatttaacattgaggtggtaggttcaaaagggcttatgatatca 48497026  T
Q  398 aa 399  Q
    ||    
T  48497027 aa 48497028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 35356577 - 35356465
Alignment:
Q  1 tttttcttttgtaattttatcgtcgtagtgcaacgatgttctatttgccgtctttgtgcaacgttgttttgtctttccgtcttgatatattgtttgttcg 100  Q
    |||||||||||| ||||| | ||  |||||||||| || | | || | ||||||||||||| |||||||||| ||||||||||| |||| ||||||||||    
T  35356577 tttttcttttgtgattttgttgttttagtgcaacgttgatttgttcgtcgtctttgtgcaatgttgttttgtttttccgtcttgttatagtgtttgttcg 35356478  T
Q  101 gttcagattgtca 113  Q
     ||||||||||||    
T  35356477 attcagattgtca 35356465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 31065299 - 31065215
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||||||||||||||||||||||| ||||  |  |||| | ||| || |||||||||||||| || ||||||||||||||||    
T  31065299 tttttcagccaacttcgttaaaaagtgcttatagaccatttgaaattaagatggtaggtccaaaaatgcttatgatatcaaacat 31065215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 11580588 - 11580671
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||||||| |||||||||||||| | |||||  |||||||||| || |||||||| |||||||| |||||| ||| |||||    
T  11580588 ttttcagccaaattcgttaaaaagtgctcatgaaccatttaacattaagatggtaggttcaaaagtgcttatgacatccaacat 11580671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 27458239 - 27458322
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||||||||||||||||||| || |||| ||  ||||||  || || |||||||| ||||||||||||||| |||||||||    
T  27458239 ttttcagccaacttcgttaaaaaatgcttataaaccatttaaacttaagatggtaggttcaaaagtgtttatgacatcaaacat 27458322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 402
Target Start/End: Original strand, 31165616 - 31165698
Alignment:
Q  320 tttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||| ||||||||||||||| ||| ||||  |  |||||||||| || ||||||||||||||||| |||||| |||||||||    
T  31165616 tttcatccaacttcgttaaaacgtgcttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacat 31165698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 49703934 - 49703987
Alignment:
Q  346 ttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaa 399  Q
    ||||||| |||||||||||||||||||| |||||||| || |||||||||||||    
T  49703934 ttatgaactatttaacattgaggtggtatgtccaaaactgcttatgatatcaaa 49703987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 4080581 - 4080526
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggta 373  Q
    |||||| || |||||||||||||| |||||||| |||||||||||||||| |||||    
T  4080581 tttttcggctaacttcgttaaaaaatgtttatggattatttaacattgagatggta 4080526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 34659574 - 34659515
Alignment:
Q  93 tttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    ||||||||||||||||||||||||||  ||  |||||||||| || ||||||||||||||    
T  34659574 tttgttcggttcagattgtcatatcagcttagatccaatgcagatccaatcaatgacttt 34659515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 402
Target Start/End: Complemental strand, 2765732 - 2765650
Alignment:
Q  320 tttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||| || |||| |||||||| | ||||| ||| |||||||||||||||| ||| ||||||| || |||||| |||||||||    
T  2765732 tttcaaccgactttgttaaaaaatatttataaatcatttaacattgaggtgatagatccaaaaatgcttatgacatcaaacat 2765650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 402
Target Start/End: Complemental strand, 46798494 - 46798409
Alignment:
Q  316 catttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||| | |||||| |||| |||||| |||||||  ||||||||||||| ||||| || ||||| ||||||||| |||||||||    
T  46798494 catttttcggtcaactttgttagaaagtgcttatgaaccatttaacattgagttggta-gttcaaaaatgtttatgacatcaaacat 46798409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 10877530 - 10877586
Alignment:
Q  96 gttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    |||||||||| |||||||||||| |||  ||||| |||| |||||||||||||||||    
T  10877530 gttcggttcatattgtcatatcattttcaatccagtgcagattcaatcaatgacttt 10877586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 15939010 - 15939066
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtag 374  Q
    ||||||| |||||||||||||| |||| ||||| || |||||||||| |||||||||    
T  15939010 tttttcaaccaacttcgttaaatagtgcttatggatcatttaacattaaggtggtag 15939066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 15939099 - 15939155
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtag 374  Q
    ||||||| |||||||||||||| |||| ||||| || |||||||||| |||||||||    
T  15939099 tttttcaaccaacttcgttaaatagtgcttatggatcatttaacattaaggtggtag 15939155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 16580640 - 16580596
Alignment:
Q  355 atttaacattgaggtggtaggtccaaaagtgtttatgatatcaaa 399  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||    
T  16580640 atttaacattgaggtgatagatccaaaagtgtttatgacatcaaa 16580596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 15947480 - 15947539
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtc 377  Q
    ||||||| ||||||| |||||| |||| ||||| || |||||||||| ||||||||||||    
T  15947480 tttttcaaccaactttgttaaacagtgcttatggatcatttaacattaaggtggtaggtc 15947539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 28292267 - 28292326
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtc 377  Q
    ||||||| ||||||| |||||| |||| ||||| || |||||||||| ||||||||||||    
T  28292267 tttttcaaccaactttgttaaacagtgcttatggatcatttaacattaaggtggtaggtc 28292326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 900276 - 900333
Alignment:
Q  95 tgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    ||||||||||||||||||||||||  ||| ||||| |||  || ||||||||||||||    
T  900276 tgttcggttcagattgtcatatcaactttgatccagtgcggatccaatcaatgacttt 900333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 11751786 - 11751868
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaaca 401  Q
    |||||||||||||||||||||||||||||||  |  |||||||||| || |||||||||||||||||||||||| ||||||||    
T  11751786 ttttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatggtaggtccaaaagtgtttatgacatcaaaca 11751868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 10479856 - 10479774
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||||||||||||||||||||| |||| ||  |||||||||| || | ||||||| |||||||| ||||| |||||||||    
T  10479856 ttttcagccaacttcgttaaaaagtgcttat-aaacatttaacattaagatagtaggtctaaaagtgtctatgacatcaaacat 10479774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 16194429 - 16194348
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaac 400  Q
    |||||||||||||||||||||||||||||||  |  |||||||||| || ||||||||||||||||| |||||| |||||||    
T  16194429 ttttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatcaaac 16194348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 22224157 - 22224080
Alignment:
Q  327 caacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataa 404  Q
    |||||| |||||||| |||||||| || || ||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  22224157 caactttgttaaaaaatgtttatggatcatctaacattgatgtggtaggtccaaaagtgtttatgacatcaaatataa 22224080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 402
Target Start/End: Original strand, 2757248 - 2757323
Alignment:
Q  327 caacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||| |||||||| |||| ||| |  ||||||||||||||||  ||||| |||| || ||||||||||||||||    
T  2757248 caactttgttaaaaattgttgatgtaccatttaacattgaggtgagaggtctaaaaatgcttatgatatcaaacat 2757323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 32237929 - 32237870
Alignment:
Q  93 tttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    ||||||||||||||||||||| ||||  ||  ||||| |||| |||||||||||||||||    
T  32237929 tttgttcggttcagattgtcagatcagcttagatccagtgcacattcaatcaatgacttt 32237870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 8795881 - 8795811
Alignment:
Q  327 caacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatca 397  Q
    |||||||||||||||||| |||| ||  |||||| ||| || ||||||||||||||||  |||||| ||||    
T  8795881 caacttcgttaaaaagtgcttataaaccatttaatattaagatggtaggtccaaaagtacttatgacatca 8795811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 29306170 - 29306244
Alignment:
Q  328 aacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||||||| ||||||||||||  |  |||||| ||| || |||||||| |||||||| |||||| |||||||||    
T  29306170 aacttcgttgaaaagtgtttatagaccatttaatattaagatggtaggttcaaaagtgcttatgacatcaaacat 29306244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 35670568 - 35670653
Alignment:
Q  68 tttgtctttcc-gtcttgatatattgtttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    ||||||||||| |||||| |||  |||||||||| |||||||||| | || |  ||  ||||||||||||| ||||||||||||||    
T  35670568 tttgtctttcctgtcttgttatgatgtttgttcgattcagattgttagataaacttcgatccaatgcatatccaatcaatgacttt 35670653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 39905073 - 39905008
Alignment:
Q  326 ccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatg 391  Q
    |||||||||||| |||||||||| | ||||||||||| |||||| ||| |  |||||| |||||||    
T  39905073 ccaacttcgttataaagtgtttaaggattatttaacaatgaggtagtatgctcaaaagagtttatg 39905008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 47085124 - 47085040
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||| || |||||||| ||||| ||||||| | |||||||||    
T  47085124 tttttcagccaacttcgttaaaaagtgtttgtaaatcatttaacattaagatggtaggttcaaaaatgtttattacatcaaacat 47085040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 410
Target Start/End: Complemental strand, 3839463 - 3839371
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataatcactt 410  Q
    ||||| ||||||||||||||||| |||| ||||||  ||||||||||| ||||||| ||||||||||| |||| | | |||||||||| ||||    
T  3839463 ttttttagccaacttcgttaaaaggtgtctatgaaccatttaacattggggtggtaagtccaaaagtgcttataacaccaaacataattactt 3839371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 34595890 - 34595971
Alignment:
Q  319 ttttcagccaacttcgttaaaaag-tgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaa 399  Q
    ||||||||||||||| |||||||  |||||||  |  |||||||||| || |||||||||||||||||||||||| ||||||    
T  34595890 ttttcagccaacttcattaaaaaaatgtttatagaccatttaacattaagatggtaggtccaaaagtgtttatgacatcaaa 34595971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 38582416 - 38582340
Alignment:
Q  326 ccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||  |||||||||||||||||| |||||||| ||||| |  ||||||||||| ||||||||| ||| |||||    
T  38582416 ccaactttattaaaaagtgtttatgaactatttaacgttgagattataggtccaaaaatgtttatgacatctaacat 38582340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 46918580 - 46918639
Alignment:
Q  93 tttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    ||||||||||||||||||||| ||||  ||  |||||||||| |||||||||||||||||    
T  46918580 tttgttcggttcagattgtcagatcagcttagatccaatgcaaattcaatcaatgacttt 46918639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 30154522 - 30154450
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttat 390  Q
    |||||||||||||||| |||||| ||||||| | |  |||||||||| | |||||||| ||||||||| ||||    
T  30154522 tttttcagccaacttcattaaaaggtgtttacggaccatttaacattaatgtggtaggcccaaaagtgcttat 30154450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 19895617 - 19895558
Alignment:
Q  93 tttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    |||| |||||||||||||||||||||  ||  ||||| |||| |||||||||||||||||    
T  19895617 tttgatcggttcagattgtcatatcagcttcgatccagtgcagattcaatcaatgacttt 19895558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 35562511 - 35562606
Alignment:
Q  57 tgcaacgttgttttgtctttccgtcttgatatattgtttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    |||||||||||||||  || || ||||| ||   |||||| |||||||| ||||||| | ||  ||| |||||||||| |||||||||||||||||    
T  35562511 tgcaacgttgttttgctttcccttcttgttacggtgtttgctcggttcaaattgtcaaaccaactttaatccaatgcacattcaatcaatgacttt 35562606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 33407127 - 33407211
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||  |||||| |||||||| || ||||| |  |||||||||||| | | ||||| |||||| |||||||| |||||||||    
T  33407127 tttttcaatcaactttgttaaaaattgcttatggaccatttaacattgatgcgttaggttcaaaagggtttatgacatcaaacat 33407211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 35129426 - 35129398
Alignment:
Q  193 gcaatcttttaagttagatgtttatagca 221  Q
    |||||||||||||||||||||||||||||    
T  35129426 gcaatcttttaagttagatgtttatagca 35129398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 508075 - 508158
Alignment:
Q  319 ttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    |||||||||||||||||||||||||||||||  |  ||||||| || || |||||||||||||| ||||||||| |||||||||    
T  508075 ttttcagccaacttcgttaaaaagtgtttatagaccatttaacgttaagatggtaggtccaaaaatgtttatgacatcaaacat 508158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 410
Target Start/End: Original strand, 5177373 - 5177465
Alignment:
Q  318 tttttcagccaacttcgttaaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacataatcactt 410  Q
    ||||||||| |||||||||||||| | |||||| |  ||||||||||||| || || || ||||||||||||| | |||||||||||||||||    
T  5177373 tttttcagcaaacttcgttaaaaaatatttatggaccatttaacattgagttgatatgttcaaaagtgtttataacatcaaacataatcactt 5177465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 994961 - 994896
Alignment:
Q  337 aaaaagtgtttatgaattatttaacattgaggtggtaggtccaaaagtgtttatgatatcaaacat 402  Q
    ||||| || |||||||  |||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  994961 aaaaaatgcttatgaaccatttaacattgatgtggtaggttcaaaagtgtttatgacatcaaacat 994896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 14055471 - 14055515
Alignment:
Q  316 catttttcagccaacttcgttaaaaagtgtttatgaattatttaa 360  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  14055471 catttttcagctaacttcgttaaaaagtgtttatgaatcatttaa 14055515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 6074761 - 6074610
Alignment:
Q  1 tttttcttttgtaattttatcgtcgtagtgcaacgatgttctatttgccgtctttgtgcaacgttgttttgtcttt-ccgtcttgatatattgtttgttc 99  Q
    |||||||| ||| ||||  ||||| |||||||||  |||| | |||| ||||||||||| || |||||| |||||| || ||||| |  | |||||||||    
T  6074761 tttttcttctgtgatttcgtcgtcttagtgcaacactgttttgtttgtcgtctttgtgcgaccttgttt-gtcttttccctcttgttcaagtgtttgttc 6074663  T
Q  100 ggttcagattgtcatatcactttttatccaatgcatattcaatcaatgacttt 152  Q
    |||||||||||||| ||||  ||  ||||| || | || ||||||||||||||    
T  6074662 ggttcagattgtcagatcaacttcgatccagtgtagatccaatcaatgacttt 6074610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 8957385 - 8957447
Alignment:
Q  91 tgtttgttcggttcagattgtcatatcactttttatccaatgcatattcaatcaatgactttt 153  Q
    ||||||||| ||||||||||||| ||||  ||  |||||||||| |||||| |||||||||||    
T  8957385 tgtttgttcagttcagattgtcagatcagcttcgatccaatgcagattcaaccaatgactttt 8957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13007781 - 13007849
Alignment:
Q  1 tttttcttttgtaattttatcgtcgtagtgcaacgatgttctatttgccgtctttgtgcaacgttgttt 69  Q
    ||||||||| || ||||  ||||| |||||||||| |||| |||| | ||||||||||| |||||||||    
T  13007781 tttttctttcgtgatttcgtcgtcttagtgcaacgttgttttattcgtcgtctttgtgcgacgttgttt 13007849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 39452575 - 39452547
Alignment:
Q  190 cctgcaatcttttaagttagatgtttata 218  Q
    |||||||||||||||||||||||||||||    
T  39452575 cctgcaatcttttaagttagatgtttata 39452547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University