View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_16 (Length: 403)
Name: NF6727_low_16
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 109 - 253
Target Start/End: Complemental strand, 37372435 - 37372290
Alignment:
| Q |
109 |
attatcaaatttcattctattaagtgagattggttacatgaatcaaatgacactataatattatgtcatatatcacatcattctcgaactcatcaatctc |
208 |
Q |
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| T |
37372435 |
attatcaaattttattctattaagtgagattggttacatgaatcaaataacactataatattatgtcatatatcacatcactctcgaactcatcaatctc |
37372336 |
T |
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| Q |
209 |
taaaa-ttttataatattttctcttgtagttttcctaaatctccac |
253 |
Q |
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| T |
37372335 |
taaaacttttataataatttctcttgtagttttcctaaatctccac |
37372290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 272 - 401
Target Start/End: Complemental strand, 37372304 - 37372175
Alignment:
| Q |
272 |
ttcctaaatctccacttgccactgttaatttgactaccatccatctcatttatttccttaatgcaaaatttataggttttgtatgtacataacattattt |
371 |
Q |
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| T |
37372304 |
ttcctaaatctccacttgccactagtaatttgacaaccatccatctcatttatttccttaatgcaaaatttataggtcttgtatgtacataacattattt |
37372205 |
T |
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| Q |
372 |
tggtgcggtcttgagtgatgtccatctcat |
401 |
Q |
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| T |
37372204 |
tggtgcggtcttgagtgaggtccatgtcat |
37372175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 37372951 - 37372905
Alignment:
| Q |
71 |
tcctttatgtttagtttttctatccatgccaacaatcaattatcaaa |
117 |
Q |
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| T |
37372951 |
tcctttatgtttagtttttctatccatgccaacaatcaattatcaaa |
37372905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 37373022 - 37372981
Alignment:
| Q |
8 |
aaaaagcatttaggaataaagatttaatcaaaagttatttcc |
49 |
Q |
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| T |
37373022 |
aaaaagcatctaggaatacagatttaatcaaaagttatttcc |
37372981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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