View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_18 (Length: 381)
Name: NF6727_low_18
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_18 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0821 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 11472983 - 11473354
Alignment:
| Q |
20 |
cacccaaaaatgtaagtgaggtaagaagtttccatggtttagcaagtttctataggaggtttgtgaaagattttagcaccattgctgcacctcttaatga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472983 |
cacccaaaaatgtaagtgaggtaagaagtttccatggtttagcaagtttctataggaggtttgtgaaagattttagcaccattgctgcacctcttaatga |
11473082 |
T |
|
| Q |
120 |
gattgttaagaaaaatgttgtttttaaatggggtgagaaacaagagcaagcttttgctgcacttaaagaaaaactcaccaaagcaccaattttagcatta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11473083 |
gattgttaagaaaaatgttgtttttaaatggggtgagaaacaagagcaagcttttgctgcacttaaagaaaaactcaccaaagcaccaattttagcatta |
11473182 |
T |
|
| Q |
220 |
----------ccaaatcttttgaaattgaatgtgatgcttctaatgttggaattggggctgttttgatgcaagaaggacatccaattgcttattttagtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11473183 |
ccaaatttttccaaatcttttgaaattgaatgtgatgcttctaatgttggaattggggctgttttgatgcaagaaggacatccaattgcttattttagtg |
11473282 |
T |
|
| Q |
310 |
agaagttaaagggtgcttcccttaattactccacttatgataaggaattgtatgctttatctagatcattgc |
381 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
11473283 |
agaagttgaagggtgcttcccttaattactccacttatgataaggaattgtatgctttgtttagatcattgc |
11473354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 381
Target Start/End: Complemental strand, 21462386 - 21462014
Alignment:
| Q |
20 |
cacccaaaaatgtaagtgaggtaagaagtttccatggtttagcaagtttctataggaggtttgtgaaagattttagcaccattgctgcacctcttaatga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21462386 |
cacccaaaaatgtaagtgaggtaagaagtttccatggtttagcaagtttctataggaggtttgtgaaagattttagcaccattgctgcacctcttaatga |
21462287 |
T |
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| Q |
120 |
gattgttaagaaaaatgttgtttttaaatggggtgagaaacaagagcaagcttttgctgcacttaaa-gaaaaactcaccaaagcaccaattttagcatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21462286 |
gattgttaagaaaaatgttgtttttaaatggggtgagaaacaagagcaagcttttgctgcacttaaaggaaaaactcaccaaagcaccaattttagcatt |
21462187 |
T |
|
| Q |
219 |
a----------ccaaatcttttgaaattgaatgtgatgcttctaatgttggaattggggctgttttgatgcaagaaggacatccaattgcttattttagt |
308 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21462186 |
accaaatttttccaaatcttttgaaattgaatgtgatgcttctaatgttggaattggggctgttttgatgcaagaaggacatccaattgcttattttagt |
21462087 |
T |
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| Q |
309 |
gagaagttaaagggtgcttcccttaattactccacttatgataaggaattgtatgctttatctagatcattgc |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
21462086 |
gagaagttaaagggtgcttcccttaattactccacttatgataaggaattgtatggtttgtttagatcattgc |
21462014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 21801144 - 21801228
Alignment:
| Q |
226 |
cttttgaaattgaatgtgatgcttctaatgttggaattggggctgttttgatgcaagaaggacatccaattgcttattttagtga |
310 |
Q |
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|||||||||||||||||||||| ||||| |||| || |||||||||||| | |||||||| ||||| ||||||||||||||||| |
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| T |
21801144 |
cttttgaaattgaatgtgatgcatctaacattggcataggggctgttttgttacaagaagggcatcccattgcttattttagtga |
21801228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 381
Target Start/End: Complemental strand, 13182623 - 13182255
Alignment:
| Q |
20 |
cacccaaaaatgtaagtgaggtaagaagtttccatggtttagcaagtttctataggaggtttgtgaaagattttagcaccattgctgcacctcttaatga |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
13182623 |
cacccaaaaatgtaagtgaggtaagaattttccatggtttagcaagtttctataggaggtttgtcaaagattttagcaccattgctgcacctctaaatga |
13182524 |
T |
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| Q |
120 |
gattgttaagaaaaatgttgtttttaaatggggtgagaaacaagagcaagcttttgctgcacttaaagaaaaactcaccaaagcaccaattttagcatta |
219 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13182523 |
gattgttaagaaaaa---tgtttttaaatggggtgagaaacaagagcaagcttttgctgcacttaaagaaaaactcaccaaagcaccaattttagcatta |
13182427 |
T |
|
| Q |
220 |
c----------caaatcttttgaaattgaatgtgatgcttctaatgttggaattggggctgttttgatgcaagaaggacatccaattgcttattttagtg |
309 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13182426 |
ccaaattttttcaaatcttttgaaattgaatgtgatgcttctaatgttggaattggggctgttttgatgcaagaaggacatccaattgcttattttagtg |
13182327 |
T |
|
| Q |
310 |
agaagttaaagggtgcttcccttaattactccacttatgataaggaattgtatgctttatctagatcattgc |
381 |
Q |
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| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
13182326 |
aaaagttgaagggtgcttcccttaattactccacttatgataaggaattgtatgctttgtttagatcattgc |
13182255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 15385331 - 15385685
Alignment:
| Q |
20 |
cacccaaaaatgtaagtgaggtaagaagtttccatggtttagcaagtttctataggaggtttgtgaaagattttagcaccattgctgcacctcttaatga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| || |||||||||||| | ||||||||||||||||| |
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| T |
15385331 |
cacccaaaaatgtaagtgaggtaagaagctttcatggcttagctagtttctataggaggtttgtaaaggattttagcaccttggctgcacctcttaatga |
15385430 |
T |
|
| Q |
120 |
gattgttaagaaaaatgttgtttttaaatggggtgagaaacaagagcaagcttttgctgcacttaaagaaaaactcaccaaagcaccaattttagcatta |
219 |
Q |
| |
|
||||| || ||| | |||| |||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||| ||||||| ||| | |||||| |
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|
| T |
15385431 |
aattgtaaaaaaagaagttggttttaaatggggtgagaagcaagagcaatcctttgctgcccttaaagaaaaactcacccaagcacctattcttgcatta |
15385530 |
T |
|
| Q |
220 |
cc----------aaatcttttgaaattgaatgtgatgcttctaatgttggaattggggctgttttgatgcaagaaggacatccaattgcttattttagtg |
309 |
Q |
| |
|
|| || |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15385531 |
cctaatttttctaagtcttttgaaattgagtgtgatgcttccaatgttggaattggcgctgttttgatgcaagaaggccatccaattgcttattttagtg |
15385630 |
T |
|
| Q |
310 |
agaagttaaagggtgcttcccttaattactccacttatgataaggaattgtatgc |
364 |
Q |
| |
|
|||| ||||| || ||| |||| |||||||| ||||||||||||||||||||||| |
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|
| T |
15385631 |
agaaattaaaaggggctgccctaaattactcaacttatgataaggaattgtatgc |
15385685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 13959407 - 13959053
Alignment:
| Q |
20 |
cacccaaaaatgtaagtgaggtaagaagtttccatggtttagcaagtttctataggaggtttgtgaaagattttagcaccattgctgcacctcttaatga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| || |||||||||||| | ||||||||||||||||| |
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|
| T |
13959407 |
cacccaaaaatgtaagtgaggtaagaagctttcatggcttagctagtttctataggaggtttgtaaaggattttagcaccttggctgcacctcttaatga |
13959308 |
T |
|
| Q |
120 |
gattgttaagaaaaatgttgtttttaaatggggtgagaaacaagagcaagcttttgctgcacttaaagaaaaactcaccaaagcaccaattttagcatta |
219 |
Q |
| |
|
||||| || ||| | |||| |||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||| ||||||| ||| | |||||| |
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|
| T |
13959307 |
aattgtaaaaaaagaagttggttttaaatggggtgagaagcaagagcaatcctttgctgcccttaaagaaaaactcacccaagcacctattcttgcatta |
13959208 |
T |
|
| Q |
220 |
cc----------aaatcttttgaaattgaatgtgatgcttctaatgttggaattggggctgttttgatgcaagaaggacatccaattgcttattttagtg |
309 |
Q |
| |
|
|| || |||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
13959207 |
cctaatttttctaagtcttttgaaattgagtgtgatgcttccaatgttagaattggcgctgttttgatgcaagaaggtcatccaattgcttattttagtg |
13959108 |
T |
|
| Q |
310 |
agaagttaaagggtgcttcccttaattactccacttatgataaggaattgtatgc |
364 |
Q |
| |
|
|||| ||||| || ||| |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
13959107 |
agaaattaaaaggggctgccctaaattactcaacttatgataaggaattgtatgc |
13959053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 174 - 381
Target Start/End: Complemental strand, 17470377 - 17470160
Alignment:
| Q |
174 |
tgctgcacttaaagaaaaactcaccaaagcaccaattttagcattaccaaat----------cttttgaaattgaatgtgatgcttctaatgttggaatt |
263 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
17470377 |
tgctgcacttaaagaataacttaccaaagcaccaattttagcattaccaaatttttccaaatcttttgaaattgaatgtgatgtttctaatgttggaatt |
17470278 |
T |
|
| Q |
264 |
ggggctgttttgatgcaagaaggacatccaattgcttattttagtgagaagttaaagggtgcttcccttaattactccacttatgataaggaattgtatg |
363 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
17470277 |
ggggctgttttgatgcaagaaggacacccaattgcttattttagtgagaagttaaagggtgcttcccttaattacttcacttatgataaagaattgtatg |
17470178 |
T |
|
| Q |
364 |
ctttatctagatcattgc |
381 |
Q |
| |
|
|||| | ||||||||||| |
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| T |
17470177 |
ctttgtttagatcattgc |
17470160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0821 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0821
Description:
Target: scaffold0821; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 3033 - 2983
Alignment:
| Q |
70 |
tataggaggtttgtgaaagattttagcaccattgctgcacctcttaatgag |
120 |
Q |
| |
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|||||| | ||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
3033 |
tataggcgttttgtgagagattttagcaccattgctgcacctctcaatgag |
2983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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