View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_19 (Length: 374)
Name: NF6727_low_19
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 23 - 373
Target Start/End: Complemental strand, 2243289 - 2242939
Alignment:
| Q |
23 |
ttatgagactaatctctgcatgggtgcttaggtcacatctcaaagctcttcacttgtcttaaaaatgtgatatgcagggaccgaatcgcggttctccccc |
122 |
Q |
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| T |
2243289 |
ttatgagactaatctctgcatgggtgcttaggtcacatctcaaagctcttcccttgtcttaaaaatgtgatatgcagggaccgaatcgcggttctccccc |
2243190 |
T |
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| Q |
123 |
ataaactcagcactacttacgggccattgggtcagaggattttaagcacagataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagata |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243189 |
ataaactcagcactacttacgggccattgggtcagaggattttaagcacaaataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagata |
2243090 |
T |
|
| Q |
223 |
gaaacnnnnnnnnaatattttctctgaactttcatccttcaaagtctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaat |
322 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2243089 |
gaaactttttttaaatattttctctgaactttcatccttcaaagtctaaggattgctaagttatttcaacttatctagagaaaagtaacatgattgcaat |
2242990 |
T |
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| Q |
323 |
ttcttcactgtcatttggaatcacatcttggcatacaaaccaaacaccaaa |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242989 |
ttcttcactgtcatttggaatcacatcttggcatacaaaccaaacaccaaa |
2242939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 161 - 373
Target Start/End: Complemental strand, 31780358 - 31780137
Alignment:
| Q |
161 |
attttaagcacagataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaacnnnnnnnnaatattttctctgaactttcatcct |
260 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
31780358 |
attttaagcacaaataaggaaaaaca-aaaaaggttaaaggaatttatgaagtacatacatagaaactttttttaaatattttctctgaactttcatcct |
31780260 |
T |
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| Q |
261 |
tcaaagtctaaggattgctaag----ttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactg------tcatttggaatcaca-tc |
349 |
Q |
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|||||||||||||||||| ||| ||||||| ||||| | |||| ||||||||||| | |||||||||||||| | ||||||||||||| || |
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| T |
31780259 |
tcaaagtctaaggattgccaagttatttatttccacttacctagag-aaagtaacatgtctacaatttcttcactgtgtcattaatttggaatcacagtc |
31780161 |
T |
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| Q |
350 |
ttggcatacaaaccaaacaccaaa |
373 |
Q |
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|| |||||||||||||||||||| |
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| T |
31780160 |
ttcacatacaaaccaaacaccaaa |
31780137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 373
Target Start/End: Complemental strand, 29057292 - 29057158
Alignment:
| Q |
240 |
ttttctctgaactttcatccttcaaagtctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttg |
339 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||||| ||||||||| ||| | || | || |
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| T |
29057292 |
ttttctctgaattttcatccttcaaagtctaacgattgctaaattatttcaacttagctacagaaaagtaacatgtctgcaatttcatcagtctcttctg |
29057193 |
T |
|
| Q |
340 |
gaatcaca-tcttggcatacaaaccaaacaccaaa |
373 |
Q |
| |
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||||||| |||| |||| ||| ||||||||||| |
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| T |
29057192 |
caatcacagtcttcacatagaaatcaaacaccaaa |
29057158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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