View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_2 (Length: 845)
Name: NF6727_low_2
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 1 - 832
Target Start/End: Complemental strand, 45201866 - 45201041
Alignment:
| Q |
1 |
tttgagccaacttagggttctccttggtaacatcaatcatatattgggaaacatctttgactttcattctatgggcttctggggaactgatcccttctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201866 |
tttgagccaacttagggttctccttggtaacatcaatcatatattgggaaacatctttgactttcattctatgggcttctggggaactgatcccttctgt |
45201767 |
T |
|
| Q |
101 |
ccaagaaggagatcttccatgcatgtatggataattattaggtctgctaacagattccctcgccttaatcttttctacattagggatatttttgaattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45201766 |
ccaagaaggagatcttccatgcatgtatggataattattaggtctgctaacagattccctcgccttaatcttttctacgttagggatatttttgaattca |
45201667 |
T |
|
| Q |
201 |
tttaacggnnnnnnnaattcttctttgcgagtagggggcctgctgcttacatcagattccttccctgcatcggcaaaatgtttatacctgtttccttttt |
300 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201666 |
tttaacggtttttttaattcttctttgcaagtagggggcctgctgcttacatcagattccttccctgcatcggcaaaatgtttatacctgtttccttttt |
45201567 |
T |
|
| Q |
301 |
caaaagtcctaaagtctgaagtttcttcagatgaacttccaaccccgctgctgaacgatgtaatgtgagatgaatcaagatctcttgatgagggactcgc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201566 |
caaaagtcctaaagtctgaagtttcttcagatgaacttccaaccccgctgctgaacgatgtaatgtgagatgaatcaagatctcttgatgagggactcgc |
45201467 |
T |
|
| Q |
401 |
tacaaaagaagaatcatcatactcaatatgtgacccagctgcatcagatggaataagagttccaggagctgccatgaggtcaacaatgtactccctgaaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201466 |
tacaaaagaagaatcatcatactcaatatgtgacccagctgcatcagatggaataagagttccaggagctgccatgaggtcaacaatgtactccctgaaa |
45201367 |
T |
|
| Q |
501 |
ttcagataaatcataactgatatatacataataacaggtaaagctattgatatgtgcataaattttttgcttcggtaaatgtatataaattagttatgcc |
600 |
Q |
| |
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| T |
45201366 |
ttcagataaatcataactgatatatacataataacaggtaaagctattgatatgtgcataaattttttgcttcggtaaatgtatataaaatagttatg-- |
45201269 |
T |
|
| Q |
601 |
tacttgcctataccgccaaaata-aaatttaacaaacttaccttccctcgtcaatcttgacaaagttcattgccacatcatcagaacctgtatattgtat |
699 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45201268 |
------cctataccgccaaaatacaaatttaacaaacttaccttccctcgtcaatcttgacaaagttcattgccacatcatcagaacctgtatattgcat |
45201175 |
T |
|
| Q |
700 |
tcctttcaccaagcgacaagggatgcccaaactatcagctaacacctacatacagagaaatttaatgttattacaagaatcatgttagtttttctaaag- |
798 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45201174 |
tcctttcaccaaccgacaagggatgcccaaactatcagctaacacctacatacagagaaatttaatgttattacaagaatcatggaagtttttctaaaga |
45201075 |
T |
|
| Q |
799 |
nnnnnnnntgctcctgattgccaattctcttgat |
832 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
45201074 |
aaaaaaaatgctcctgattgccaattctcttgat |
45201041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 315 - 502
Target Start/End: Complemental strand, 30003643 - 30003456
Alignment:
| Q |
315 |
tctgaagtttcttcagatgaacttccaaccccgctgctgaacgatgtaatgtgagatgaatcaagatctcttgatgagggactcgctacaaaagaagaat |
414 |
Q |
| |
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|||||||||||||| |||||||||||||| || ||||| | |||| || |||| ||||| || ||||||||||| ||||| || | |||| | || | |
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| T |
30003643 |
tctgaagtttcttccgatgaacttccaacaccactgctagatgatgcaacacgagacgaatcgaggtctcttgatgaaggacttgccataaaaaaggact |
30003544 |
T |
|
| Q |
415 |
catcatactcaatatgtgacccagctgcatcagatggaataagagttccaggagctgccatgaggtcaacaatgtactccctgaaatt |
502 |
Q |
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| T |
30003543 |
cgtcatactcgatatgtgatccagtagcatcagatggaataagagttccaggatctgccataaggtcaacaatgtactccctgaaatt |
30003456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 637 - 711
Target Start/End: Complemental strand, 30003127 - 30003053
Alignment:
| Q |
637 |
ttaccttccctcgtcaatcttgacaaagttcattgccacatcatcagaacctgtatattgtattcctttcaccaa |
711 |
Q |
| |
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||||||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
30003127 |
ttaccttccgtcgttaatcttgacaaagtttattgccacgtcatcagaacctgtatattgctttcctttcaccaa |
30003053 |
T |
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Back To:
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