View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6727_low_21 (Length: 362)

Name: NF6727_low_21
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6727_low_21
NF6727_low_21
[»] chr5 (3 HSPs)
chr5 (15-347)||(9815719-9816051)
chr5 (18-347)||(26354031-26354360)
chr5 (235-318)||(38434910-38434993)
[»] chr3 (15 HSPs)
chr3 (15-330)||(20015302-20015617)
chr3 (29-347)||(20007387-20007705)
chr3 (28-335)||(26653845-26654152)
chr3 (89-336)||(19812979-19813226)
chr3 (71-342)||(26647694-26647965)
chr3 (89-342)||(19839083-19839336)
chr3 (89-318)||(19956798-19957027)
chr3 (89-334)||(20035778-20036023)
chr3 (88-315)||(20033508-20033735)
chr3 (184-315)||(20046837-20046968)
chr3 (229-342)||(19832560-19832673)
chr3 (215-342)||(19819250-19819377)
chr3 (97-342)||(19951814-19952059)
chr3 (103-304)||(19849724-19849925)
chr3 (90-141)||(20006430-20006481)
[»] chr4 (1 HSPs)
chr4 (184-341)||(6397051-6397208)
[»] chr7 (3 HSPs)
chr7 (184-336)||(12495261-12495413)
chr7 (184-336)||(12519065-12519217)
chr7 (184-342)||(12579358-12579516)
[»] chr1 (3 HSPs)
chr1 (88-318)||(1717934-1718164)
chr1 (37-134)||(38483819-38483916)
chr1 (188-303)||(38483710-38483819)
[»] chr8 (2 HSPs)
chr8 (229-318)||(22655631-22655720)
chr8 (91-143)||(22685517-22685569)
[»] scaffold0038 (1 HSPs)
scaffold0038 (85-129)||(19557-19601)
[»] chr6 (1 HSPs)
chr6 (85-129)||(28219059-28219103)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 9816051 - 9815719
Alignment:
Q  15 catcagctatcatacaatcatcagcagaactttcagcaggaacatcaacacaaagctttccaacattaagaaggtcaacaagattgggaggaaatccagg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9816051 catcagctatcatacaatcatcagcagaactttcagcaggaacatcaacacaaagctttccaacattaagaaggtcaacaagattgggaggaaattcagg 9815952  T
Q  115 tggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgcttcacaatgttctgaaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9815951 tggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgcttcacaatgttctgaaca 9815852  T
Q  215 aaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9815851 aaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcag 9815752  T
Q  315 atataagcctacaatagttttttcaagccatga 347  Q
    |||||||||||||||||||||| ||||||||||    
T  9815751 atataagcctacaatagtttttccaagccatga 9815719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 26354031 - 26354360
Alignment:
Q  18 cagctatcatacaatcatcagcagaactttcagcaggaacatcaacacaaagctttccaacattaagaaggtcaacaagattgggaggaaatccaggtgg 117  Q
    ||||||||||||||||||  |||||| ||||||||||||||||| ||||||  |||  |  |||||||| ||||||||||||||||||||||||||||||    
T  26354031 cagctatcatacaatcatgggcagaaatttcagcaggaacatcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtgg 26354130  T
Q  118 aaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgcttcacaatgttctgaacaaaa 217  Q
    || |||||||||||||  |||||||| | ||||||| ||||||| |||||  |||||||| |||| |||||||||||||||||||||||| | |||||||    
T  26354131 aacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaa 26354230  T
Q  218 tcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagata 317  Q
    ||||||||||||||||  |||||| |||||||||||| ||| |||||||| |||||||||||| ||||||||||||| |||||||||| |  |||| |||    
T  26354231 tcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaata 26354330  T
Q  318 taagcctacaatagttttttcaagccatga 347  Q
    ||||||||||||||||||| ||||| ||||    
T  26354331 taagcctacaatagtttttccaagcaatga 26354360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 38434910 - 38434993
Alignment:
Q  235 cgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatat 318  Q
    |||||||||||||||| ||| ||| ||  ||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||    
T  38434910 cgattgcttccaccaccttgcataacgcttggtaacatctgcctcaaataatcttggtggaaaatacaaatttttatcaaatat 38434993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 20015302 - 20015617
Alignment:
Q  15 catcagctatcatacaatcatcagcagaactttcagcaggaacatcaacacaaagctttccaacattaagaaggtcaacaagattgggaggaaatccagg 114  Q
    |||||||| || ||||| ||| |||||||||| |||||||| ||||| | ||||  ||||||   ||||||||||||||||||||||||  |||||||||    
T  20015302 catcagctgtcgtacaaacatgagcagaacttccagcaggagcatcatcgcaaaattttccatacttaagaaggtcaacaagattgggacaaaatccagg 20015401  T
Q  115 tggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgcttcacaatgttctgaaca 214  Q
    ||||| ||||||||||||||  ||||||| | ||||||||| ||||| ||| |  ||||||||||||| |||||||||||||||||||||||||| ||||    
T  20015402 tggaacaccaacatcattactgcttctgttagtttttcctagatgaggtctatgtttccttgaactttcacttctcttccgcttcacaatgttcttaaca 20015501  T
Q  215 aaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcag 314  Q
    |||||    ||||||||||||||||||||||||||||||| ||| |||||||  |||||||||||||| |||||||||||||||||||| |||| |||||    
T  20015502 aaatctctgtgacccaataccgattgcttccaccacattgcataacgtgtggctacatctgcctcaaagagtcttggtggaaaatacaagtttttatcag 20015601  T
Q  315 atataagcctacaata 330  Q
    ||||||||||||||||    
T  20015602 atataagcctacaata 20015617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 20007387 - 20007705
Alignment:
Q  29 caatcatcagcagaactttcagcaggaacatcaacacaaagctttccaacattaagaaggtcaacaagattgggaggaaatccaggtggaaaaccaacat 128  Q
    ||||||| ||||| | ||||||||||||||||| ||||||  ||||||| |  ||||   ||||||||||||||||||||||||||||||| ||||||||    
T  20007387 caatcatgagcaggattttcagcaggaacatcatcacaaaattttccaaaaacaagagcatcaacaagattgggaggaaatccaggtggaacaccaacat 20007486  T
Q  129 cattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgcttcacaatgttctgaacaaaatcgacatgacc 228  Q
    || | |||||||||| |  || ||||||||||||||| |   |||||||| ||  |||||||||||||||||||| ||||| |||||||||| |||||||    
T  20007487 caatccaacttctgttagattgtcctacatgagatctatgtctccttgaaattgcacttctcttccgcttcacaacgttcttaacaaaatcgccatgacc 20007586  T
Q  229 caataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatataagcctacaa 328  Q
    |||||||  ||||||||||||| ||| ||||||||||   ||| |||||||||||  ||||||||||||||||||||||| |||||||||||||||| ||    
T  20007587 caataccacttgcttccaccactttgcatatcgtgtgcgtacagctgcctcaaaatatcttggtggaaaatacaaatttttatcagatataagcctaaaa 20007686  T
Q  329 tagttttttcaagccatga 347  Q
    ||||| || ||||| ||||    
T  20007687 tagttcttccaagcaatga 20007705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 335
Target Start/End: Complemental strand, 26654152 - 26653845
Alignment:
Q  28 acaatcatcagcagaactttcagcaggaacatcaacacaaagctttccaacattaagaaggtcaacaagattgggaggaaatccaggtggaaaaccaaca 127  Q
    |||||||| ||||||| ||||||||||||||||| ||||||  ||||||  | || ||  |||||||||||||||||||||||||||||||| || || |    
T  26654152 acaatcatgagcagaattttcagcaggaacatcagcacaaaattttccataaatatgagtgtcaacaagattgggaggaaatccaggtggaacactaaaa 26654053  T
Q  128 tcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgcttcacaatgttctgaacaaaatcgacatgac 227  Q
    ||   || |||| ||  |  ||| |||||||||| |||    |||||||||||   |||||||||||| ||||||||||||| |||||||||  ||||||    
T  26654052 tcgacaccacttttgctagctttccctacatgagctctaggtttccttgaactcacacttctcttccgtttcacaatgttcttaacaaaatctccatgac 26653953  T
Q  228 ccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatataagcctaca 327  Q
    ||||||||  ||||||||||||| ||| ||| ||  || | |||||||||||||| |  |||||||||||||||||||||| || ||| ||| |||| ||    
T  26653952 ccaataccagttgcttccaccactttgcataacgcatgatgacatctgcctcaaacaaccttggtggaaaatacaaatttttataagaaataggcctgca 26653853  T
Q  328 atagtttt 335  Q
     |||||||    
T  26653852 gtagtttt 26653845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 336
Target Start/End: Complemental strand, 19813226 - 19812979
Alignment:
Q  89 tcaacaagattgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttc 188  Q
    ||||||||||||||||||||| ||||||||| | || || || ||| ||||||||||| |||||||||||| | || ||  || ||||||||   |||||    
T  19813226 tcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacatgtggtcggtgttttcttgaactggaacttc 19813127  T
Q  189 tcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtct 288  Q
    | |||||   |||||| || | |||||||||| |  | || || ||  |||||||||||||| |   |||  | ||||||||||||||||||||||||||    
T  19813126 ttttccgacgcacaatattgttaacaaaatcgtcgcgtcctaaaacaaattgcttccaccacttgacataatgcgtggtaacatctgcctcaaaaagtct 19813027  T
Q  289 tggtggaaaatacaaattttgatcagatataagcctacaatagttttt 336  Q
    ||||||||||||||| |||| ||||||||| ||||| || ||||||||    
T  19813026 tggtggaaaatacaattttttatcagatatgagcctgcagtagttttt 19812979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 342
Target Start/End: Complemental strand, 26647965 - 26647694
Alignment:
Q  71 tttccaacattaagaaggtcaacaagattgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtact 170  Q
    ||||||| | |||||  ||||||||||||||||||||| ||||| |||| |||||||||||||| |||| ||| |  ||||||||||  |  ||| |  |    
T  26647965 tttccaaaaataagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaactctatgtt 26647866  T
Q  171 tccttgaactttgacttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaac 270  Q
    |||||||||||  |||||  |||  || |||||| |||  |||||||||  || |||||||||| ||||| ||||||||| ||| ||| || || |||||    
T  26647865 tccttgaacttgcacttcgtttcttctgcacaattttcataacaaaatcatcacgacccaatactgattgtttccaccaccttgcataacgggtagtaac 26647766  T
Q  271 atctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatataagcctacaatagttttttcaagc 342  Q
    |||||||||||||| ||| | ||| ||||||||| |   |||||||||  | ||||| |||||||| |||||    
T  26647765 atctgcctcaaaaaatctcgatgggaaatacaaactcctatcagatatgcgtctacagtagtttttccaagc 26647694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 342
Target Start/End: Complemental strand, 19839336 - 19839083
Alignment:
Q  89 tcaacaagattgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttc 188  Q
    ||||| |||||||||| |||||||||| ||| || ||| ||| ||| |||| ||| ||  ||||||||||||| |||   |||||||||||||  |||||    
T  19839336 tcaaccagattgggagaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttc 19839237  T
Q  189 tcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtct 288  Q
    ||||||    |||||| ||||   |||||||| | |||   ||||| |||||  |||||||| ||| ||| ||| ||||||||||||||||||| | |||    
T  19839236 tcttccaacgcacaatattcttctcaaaatcgtcgtgaggaaatactgattgtatccaccaccttgcataacgtatggtaacatctgcctcaaataatct 19839137  T
Q  289 tggtggaaaatacaaattttgatcagatataagcctacaatagttttttcaagc 342  Q
    ||||||||||||||| |||| |||| ||||  | || ||||||||||| |||||    
T  19839136 tggtggaaaatacaagtttttatcatatatgggtctgcaatagtttttccaagc 19839083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 318
Target Start/End: Complemental strand, 19957027 - 19956798
Alignment:
Q  89 tcaacaagattgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttc 188  Q
    |||||||||||||||| |||||||||| ||| || ||| ||  ||| |||||||| ||  |||||||| |||| |||   |||||||||||||  |||||    
T  19957027 tcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgttaaactttcctacgtgaggtctacgcttccttgaacttgaacttc 19956928  T
Q  189 tcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtct 288  Q
    |||||||   |||||| ||||   |||||| | | |||   ||||| ||||||  ||||||| ||| ||| ||||||||||||||||||||||| | |||    
T  19956927 tcttccgacgcacaattttcttcccaaaattgtcgtgaggaaatactgattgcacccaccaccttgcataacgtgtggtaacatctgcctcaaataatct 19956828  T
Q  289 tggtggaaaatacaaattttgatcagatat 318  Q
    ||||||||||||||| |||| |||| ||||    
T  19956827 tggtggaaaatacaagtttttatcatatat 19956798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 334
Target Start/End: Original strand, 20035778 - 20036023
Alignment:
Q  89 tcaacaagattgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttc 188  Q
    |||||||||||||||| |||||||||  ||| || ||| ||| ||| |||| |||  | |||||||||||| | |||||  |  ||||||||   |||||    
T  20035778 tcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctacatgtggtctgtgttgtcttgaactggaacttc 20035877  T
Q  189 tcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtct 288  Q
    | |||||   |||||| || | ||||||| || | ||||| |||||  ||||||||||| || |   ||| | |||||||||||||||||||||||||||    
T  20035878 ttttccgacgcacaatattgttaacaaaaacgtcgtgacctaatacaaattgcttccactacttgacataacatgtggtaacatctgcctcaaaaagtct 20035977  T
Q  289 tggtggaaaatacaaattttgatcagatataagcctacaatagttt 334  Q
    ||||||||||||||| |||| ||||||||| ||||| || ||||||    
T  20035978 tggtggaaaatacaattttttatcagatatgagcctgcagtagttt 20036023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 88 - 315
Target Start/End: Original strand, 20033508 - 20033735
Alignment:
Q  88 gtcaacaagattgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgactt 187  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||| ||||  || |   ||||||| | ||| |||  | || |||||||||  ||||    
T  20033508 gtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttcctatacgaggtctacattttcttgaacttgcactt 20033607  T
Q  188 ctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtc 287  Q
    |||||  ||  || ||| ||||  ||||||| | ||   |||| ||| ||||||||||||||  ||| ||| || |||||||||||||||||||| | ||    
T  20033608 ctcttatgccgcataatattcttcacaaaattgtcacagcccactactgattgcttccaccagtttgcataacgcgtggtaacatctgcctcaaataatc 20033707  T
Q  288 ttggtggaaaatacaaattttgatcaga 315  Q
    ||||||||||||||||||||| ||||||    
T  20033708 ttggtggaaaatacaaattttcatcaga 20033735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 20046968 - 20046837
Alignment:
Q  184 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 283  Q
    |||||| ||||| |||||||| |||| ||| |||||  || ||||||| |||||||||||||||||| ||  ||| ||  |||||||||||||||||||     
T  20046968 acttctattccgattcacaattttctcaacgaaatctccacgacccaacaccgattgcttccaccactttacataacgcatggtaacatctgcctcaaac 20046869  T
Q  284 agtcttggtggaaaatacaaattttgatcaga 315  Q
    | ||||||||||||||||||||||| ||||||    
T  20046868 aatcttggtggaaaatacaaatttttatcaga 20046837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 19832673 - 19832560
Alignment:
Q  229 caataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatataagcctacaa 328  Q
    |||||||  ||||||||||||| ||| ||| ||||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||  |||| ||     
T  19832673 caataccagttgcttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcag 19832574  T
Q  329 tagttttttcaagc 342  Q
    |||||||| |||||    
T  19832573 tagtttttccaagc 19832560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 215 - 342
Target Start/End: Complemental strand, 19819377 - 19819250
Alignment:
Q  215 aaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcag 314  Q
    |||||| |||||  |||||||  ||| ||||||||| ||| ||| ||||||||||||||||||||||| | |||||||||||||||||| |||| |||||    
T  19819377 aaatcgccatgaggcaataccagttgtttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcag 19819278  T
Q  315 atataagcctacaatagttttttcaagc 342  Q
    ||||  |||| || |||||||| |||||    
T  19819277 atattggcctgcagtagtttttccaagc 19819250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 97 - 342
Target Start/End: Complemental strand, 19952059 - 19951814
Alignment:
Q  97 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 196  Q
    ||||| ||||||||||||||||| ||||||| |||||| |||| ||| |  |||||||||||||| ||| |  || |||| |||| || |||| ||| ||    
T  19952059 attggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacatgaggtctatcttttcttggacttggagttcttttctgc 19951960  T
Q  197 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 296  Q
    | |||||| |||| ||||||||       | ||||||| ||||||| ||||||| ||| ||| ||  || || |||| |||||||||| | ||| |||||    
T  19951959 tgcacaatattcttaacaaaatttctgcaatccaatactgattgctcccaccactttgcataacgcatgctagcatcagcctcaaaaatttttgatggaa 19951860  T
Q  297 aatacaaattttgatcagatataagcctacaatagttttttcaagc 342  Q
    |||||||||||| |||||||||  |||| || |||||||| |||||    
T  19951859 aatacaaatttttatcagatatgggcctgcagtagtttttccaagc 19951814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 304
Target Start/End: Complemental strand, 19849925 - 19849724
Alignment:
Q  103 aggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgcttcaca 202  Q
    |||||||||| ||||||||||||||||||||| |||||||| |  ||||||||||  |  ||| |  || |||||||||  ||||||||| ||   ||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctacacaatgtctttgttttcttgaacttgcacttctctttcgacgcaca 19849826  T
Q  203 atgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaataca 302  Q
    |  |||| |||||||||      |||||||||||| |||||||||||| ||| ||| |||  ||||||||| ||||| ||||| || |||||||||||||    
T  19849825 actttcttaacaaaatcattgcaacccaataccgagtgcttccaccactttgcataacgtacggtaacatcagcctcgaaaagcctcggtggaaaataca 19849726  T
Q  303 aa 304  Q
    ||    
T  19849725 aa 19849724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 20006430 - 20006481
Alignment:
Q  90 caacaagattgggaggaaatccaggtggaaaaccaacatcattacaacttct 141  Q
    |||||||||||||||||||||||  ||||| |||||||||| ||| ||||||    
T  20006430 caacaagattgggaggaaatccatctggaacaccaacatcaataccacttct 20006481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 184 - 341
Target Start/End: Original strand, 6397051 - 6397208
Alignment:
Q  184 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 283  Q
    ||||||||||||||||||||| |||| |||||||||  ||||||| || |||||||||||| ||||| ||| |||  |  | |||||||| ||||||||     
T  6397051 acttctcttccgcttcacaatcttcttaacaaaatctccatgacctaacaccgattgcttctaccactttgcataatgcatagtaacatcagcctcaaac 6397150  T
Q  284 agtcttggtggaaaatacaaattttgatcagatataagcctacaatagttttttcaag 341  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| | |||||||| ||||    
T  6397151 agtcttggtggaaaatacaaatttttatcagacataggcctagagtagtttttccaag 6397208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 336
Target Start/End: Original strand, 12495261 - 12495413
Alignment:
Q  184 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 283  Q
    |||||||||| |||||||||| |||| |||||||||  |||||||||| | ||||||||||||| || ||  ||| ||  |||||| ||||||||||||     
T  12495261 acttctcttctgcttcacaatcttcttaacaaaatctccatgacccaacatcgattgcttccacaactttacataacgcatggtaatatctgcctcaaac 12495360  T
Q  284 agtcttggtggaaaatacaaattttgatcagatataagcctacaatagttttt 336  Q
    |||| ||||| |||||||||||||| || ||| || |||||| ||||||||||    
T  12495361 agtcatggtgcaaaatacaaatttttattagacatgagcctagaatagttttt 12495413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 336
Target Start/End: Original strand, 12519065 - 12519217
Alignment:
Q  184 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 283  Q
    |||||||||| |||||||||| |||| |||||||||  |||||||||| | |||||||||||||||| ||  ||| ||  ||||||  |||||||||||     
T  12519065 acttctcttctgcttcacaatcttcttaacaaaatctccatgacccaacatcgattgcttccaccactttacataacgcatggtaatttctgcctcaaac 12519164  T
Q  284 agtcttggtggaaaatacaaattttgatcagatataagcctacaatagttttt 336  Q
    |||| ||||| |||||||||||||| || ||| || |||||| ||||||||||    
T  12519165 agtcatggtgcaaaatacaaatttttattagacatgagcctagaatagttttt 12519217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 342
Target Start/End: Original strand, 12579358 - 12579516
Alignment:
Q  184 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 283  Q
    |||||||||| |||||||||| |||| ||| |||||  |||||||||| |  ||||||||||||||| ||  ||| ||  |||||| ||||||||||||     
T  12579358 acttctcttctgcttcacaatcttcttaacgaaatcttcatgacccaacattgattgcttccaccactttacataacgcatggtaatatctgcctcaaac 12579457  T
Q  284 agtcttggtggaaaatacaaattttgatcagatataagcctacaatagttttttcaagc 342  Q
    |||| ||||| |||||||||||||| || ||| || |||||| ||||||||||| ||||    
T  12579458 agtcatggtgcaaaatacaaatttttattagacatgagcctagaatagttttttgaagc 12579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 88 - 318
Target Start/End: Complemental strand, 1718164 - 1717934
Alignment:
Q  88 gtcaacaagattgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgactt 187  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |  ||||||||||| || |||    ||| |||||| |  || |    
T  1718164 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacat 1718065  T
Q  188 ctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtc 287  Q
    |||||| ||| |||| | |||| ||||||||||      ||  ||||| |||||||||||||| ||| ||| |||| |||||||| | ||||||||| ||    
T  1718064 ctcttctgctgcacacttttcttaacaaaatcgttgctgccagataccaattgcttccaccaccttgcataacgtgaggtaacatttccctcaaaaaatc 1717965  T
Q  288 ttggtggaaaatacaaattttgatcagatat 318  Q
    | | |||||||||||  |||| |||||||||    
T  1717964 tcgatggaaaatacatttttttatcagatat 1717934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 38483916 - 38483819
Alignment:
Q  37 agcagaactttcagcaggaacatcaacacaaagctttccaacattaagaaggtcaacaagattgggaggaaatccaggtggaaaaccaacatcattac 134  Q
    ||||||||||||||||||||||||| |||| |  |||  || |||| |||||||||||||||  ||||||||| ||||||||| ||||||||||||||    
T  38483916 agcagaactttcagcaggaacatcatcacagaattttaaaaaattaggaaggtcaacaagatctggaggaaattcaggtggaacaccaacatcattac 38483819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 38483819 - 38483710
Alignment:
Q  188 ctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtc 287  Q
    ||||||| |||||||||||||| |||||||||| ||||||| |||      || ||||||||||||| ||| |||||||| ||||||||||||||||||     
T  38483819 ctcttccacttcacaatgttcttaacaaaatcgccatgacctaat------tgtttccaccacattgcataacgtgtggttacatctgcctcaaaaagta 38483726  T
Q  288 ttggtggaaaatacaa 303  Q
    | ||||||| ||||||    
T  38483725 tcggtggaatatacaa 38483710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 22655631 - 22655720
Alignment:
Q  229 caataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatat 318  Q
    |||||||  ||||||||||||| ||| |||  ||||||||||||||  |||||| | |||||||||||||||||| |||| |||||||||    
T  22655631 caataccagttgcttccaccaccttgcataatgtgtggtaacatctatctcaaataatcttggtggaaaatacaagtttttatcagatat 22655720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 22685517 - 22685569
Alignment:
Q  91 aacaagattgggaggaaatccaggtggaaaaccaacatcattacaacttctgt 143  Q
    ||||||||||  || |||||||||||||| |||||||||||||| ||||||||    
T  22685517 aacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgt 22685569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 19557 - 19601
Alignment:
Q  85 aaggtcaacaagattgggaggaaatccaggtggaaaaccaacatc 129  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||    
T  19557 aaggccaacaagaatgggaggaaatccaggtagaacaccaacatc 19601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 28219059 - 28219103
Alignment:
Q  85 aaggtcaacaagattgggaggaaatccaggtggaaaaccaacatc 129  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||    
T  28219059 aaggccaacaagaatgggaggaaatccaggtagaacaccaacatc 28219103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University