View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_22 (Length: 354)
Name: NF6727_low_22
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 7818535 - 7818195
Alignment:
| Q |
1 |
aaagagaaatgataataaagttctttctcagtgattctt----gtgaacggattggagagaattgtattgggaaaaacccaa-----atataggtctttt |
91 |
Q |
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| T |
7818535 |
aaagagaaacgataataaagttctttctcactgattctttcttgtgaacggattggagagaattgtattgggaaaaacctaagtctaatataggtctttt |
7818436 |
T |
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| Q |
92 |
tgtacaaagaatttcacacatcaaagattgaatcgaccgttccaccttttctacattttgtcttccacaacaatattatcctaaggatgaatatgcatta |
191 |
Q |
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| T |
7818435 |
tgtacaaagaatttcacacatcaaagattgaatcgaccgttccaccttttctacattttgtcttccacaacaatattatcctaaggatgaatatgcatta |
7818336 |
T |
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| Q |
192 |
tgtgagtgtatataccttgagagagaaatacatatagaaaaatatgtaataagtatgataaatttgtgatgtgatgggaaataattaagagataagagaa |
291 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7818335 |
tgtgagggtatataccttgagagagaaatacatatagaaaaatatgtgataagtatgataaatttgtgatgtgatgggaaataattaagagataagagaa |
7818236 |
T |
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| Q |
292 |
tatgaggtgttaaataagtttaacaaaatatgttttgcctt |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7818235 |
tatgaggtgttaaataagtttaacaaaatatgttttgcctt |
7818195 |
T |
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