View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_24 (Length: 351)
Name: NF6727_low_24
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 38146678 - 38147012
Alignment:
| Q |
1 |
aatataaaaataaaatgtcaaaacacaagaaaaggaaaataagacactttgctgctagtatcagaagaatggtatttatgaatttgttatggaaggggtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38146678 |
aatataaaaataaaatgtcaaaacacaagaaaaggaaaataagacactttgctgctagtatcagaagaatggtatttatgaatttgttatggaaggggtc |
38146777 |
T |
|
| Q |
101 |
attatctagtttagaaaaataaagatacatctaggtttgttacttttattgtattattaatgttgtaagatagtactgattaagtgcctaattgtaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38146778 |
attatctagtttagaaaaataaagatacatctaggtttgttacttttattgtattattaatgttgtaagatagtactgattaagtgcctaattgtaatgt |
38146877 |
T |
|
| Q |
201 |
gggatgtcttnnnnnnnnnnnnnnnnnnatttaggtgtctaattgcttcgaagtgtttgatggtcaagcaaaaagtgtagtgcaactagtggtannnnnn |
300 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38146878 |
gggatgtctt--tgtgtgtgtgtgtgtgatttaggtgtctaattgcttgtaagtgtttgatggtcaagcaaaaagtgtagtgcaactagtggta--tttt |
38146973 |
T |
|
| Q |
301 |
nnnnnaaggatgtgggttttctaaatatgattctgatgt |
339 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
38146974 |
tttttaaggatgtgggttttctaaatatgattctgatgt |
38147012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 36161228 - 36161175
Alignment:
| Q |
87 |
ttatggaaggggtcattatctagtttagaaaaataaagatacatctaggtttgt |
140 |
Q |
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| T |
36161228 |
ttatgaaaggggtcattgtctagtttagaaaaatagagatatatttagatttgt |
36161175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 26039293 - 26039249
Alignment:
| Q |
96 |
gggtcattatctagtttagaaaaataaagatacatctaggtttgt |
140 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||| ||| ||||| |
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| T |
26039293 |
gggtcattgtctagtttagaaaaatagagatacatttagatttgt |
26039249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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