View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_25 (Length: 342)
Name: NF6727_low_25
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 4982980 - 4982639
Alignment:
| Q |
1 |
tcaaatgcattgaaacaatatagtttcataggacattgttcatctttaacagacattggacttgatagtggtgacaaatcatcaaatgcattatgaacat |
100 |
Q |
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| T |
4982980 |
tcaaatgcattgaaacaatatagtttcataggacattgttcatctttaacagacattggacttgatagtgttgacaaatcatcaaatgcattatgaacat |
4982881 |
T |
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| Q |
101 |
ctgagatatcgccgtgtgtaggcgataaatgtggtccttcaatctgtttatacccttttctaaaccaactattttgcataatcttgttaatagtaattct |
200 |
Q |
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| T |
4982880 |
ctgagatatcgccgtgtgtaggcgataaatgtggtccttcaatctgtttatacccttttctaaaccaactattttgcataatcttgttaatagtaattct |
4982781 |
T |
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| Q |
201 |
tgtttttggatcaggatcaaggattctataaagaagccttttcacatcagaatgaaaccattgtggaaacttgaaatcagcagttgcaatcttcttatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4982780 |
tgtttttggatcaggatcaaggattctataaagaagccttttcacatcagaatgaaaccattgtggaaacttgaaatcagcagttgcaatcttcttatac |
4982681 |
T |
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| Q |
301 |
atctccattaaatttctatcattgaaaggaagaaaacctgcc |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
4982680 |
atctccattaaatttctatcattgaaaggaagaaaacctgcc |
4982639 |
T |
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