View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_26 (Length: 336)
Name: NF6727_low_26
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 142 - 319
Target Start/End: Complemental strand, 37615703 - 37615526
Alignment:
| Q |
142 |
gtcactcaagactttatattggagatttgttattatgaggatatatcataaaataggaagattactaattaaaagctaccttctcattgagagcaatgga |
241 |
Q |
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| T |
37615703 |
gtcactcaagactttatattggagatttgttattatgaggatatatcataaaatagggagattactaattaaaagctaccttctcattgagagcaatgga |
37615604 |
T |
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| Q |
242 |
cttgatcgataatttactatgcataatccttgaacttgatttttgtagagataagatgcgtgattgataagtagaagt |
319 |
Q |
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| T |
37615603 |
cttgatcgataatttactatgcataatccttgaacttgatttttgtagagataagatgcgtgattgataagtagaagt |
37615526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 37615838 - 37615782
Alignment:
| Q |
13 |
gacatccaacaaacctgtcaaaatcaattttaaggttggaatcttatttaacttccc |
69 |
Q |
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| T |
37615838 |
gacatccaacaaacctgtcaaaatcaattttaaggttggaatcttatttaacttccc |
37615782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 318
Target Start/End: Complemental strand, 37624142 - 37624042
Alignment:
| Q |
218 |
taccttctcattgagagcaatggacttgatcgataatttactatgcataatccttgaacttgatttttgtagagataagatgcgtgattgataagtagaa |
317 |
Q |
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|||||| |||||||||||| |||| |||||||||| ||||| |||||| | || || ||||||||||||| ||||||| ||||| |||||||| ||| |
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| T |
37624142 |
taccttgtcattgagagcagtggaattgatcgatagtttacgatgcatgaaccctggttttgatttttgtagcaataagatccgtgaatgataagttgaa |
37624043 |
T |
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| Q |
318 |
g |
318 |
Q |
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| T |
37624042 |
g |
37624042 |
T |
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