View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6727_low_27 (Length: 329)
Name: NF6727_low_27
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 8027471 - 8027584
Alignment:
| Q |
205 |
atgtgttgtttgatgagtaaagttgaactaattatatgatacgttatgataaccttatatgaggatacatgatgatattaatgatgtgactaatttgaga |
304 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8027471 |
atgtgtggtttgatgagtaaagtttaactaattatatgatacgttatgataaccttatatgaggatacatgatgatattaatgatgtgactaatttgaga |
8027570 |
T |
|
| Q |
305 |
tacatgaatattct |
318 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
8027571 |
tgcatgaatattct |
8027584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 8027214 - 8027326
Alignment:
| Q |
19 |
atgtgaaagcttcaataaggtacgaggtgagagtgagtttaaattatgagtgtaaa---------ataaatgggaaagctgtattaaagggttgtaactc |
109 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8027214 |
atgtgaaagcttcaataaggtatggggtgagagtgagtttaaattataagtgtaaaataaatgtgataaatgggaaagctttattaaagggttgtaactc |
8027313 |
T |
|
| Q |
110 |
ttgagagataatc |
122 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8027314 |
ttgagagataatc |
8027326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University