View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_29 (Length: 317)
Name: NF6727_low_29
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 32551470 - 32551761
Alignment:
| Q |
21 |
gttgcaaaagttcatacccgtgattgaagatcagacctcaattgcagtgtgatgcaattgcggttgcatgaacacagcgaacagcgtgatttgttgtaca |
120 |
Q |
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| T |
32551470 |
gttgcaaaagttcatacccgtgattgaagatcagacctcaattgcagtgtgatgcaattgcggttgcatgaacacagcgaacaacgtaatttgttgcacg |
32551569 |
T |
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| Q |
121 |
gacgtcttgaaaacattctttgaagtacaaaaagtaactagcgatgatggagttggcacaggtggaggcaccggtgatggtgtttgagaagaatcagact |
220 |
Q |
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| T |
32551570 |
gacgtcttgaaaacgttctttgaagtacaaaaagtaactagcgatgatggagttggcacaggtggaggcaacggtgatggtgtttgagaagaatcagact |
32551669 |
T |
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| Q |
221 |
cggaagccgtagaaatggaactagaaagctctatataccataacagaaaagcgataaagctatagaaacttgagagattgtgtattcatctc |
312 |
Q |
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| T |
32551670 |
cggaagccgtagaaatggaactagaaagctctatataccataacagaaaagcgataaagctatagaaacttgagagattgtgtattcatctc |
32551761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 40577382 - 40577320
Alignment:
| Q |
21 |
gttgcaaaagttcatacccgtgattgaagatcagacctcaattgcagtgtgatgcaattgcgg |
83 |
Q |
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| T |
40577382 |
gttgcgaaagttcgtacacgtgattgaagatcagaccgcaattgcagtgtgatgcaattgcgg |
40577320 |
T |
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