View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_30 (Length: 312)
Name: NF6727_low_30
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 53467236 - 53466926
Alignment:
| Q |
1 |
tcattcaaaatcataaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttgaacttctacctcacacttgctacac |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53467236 |
tcattcaaaatcttaaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttggacttctacctcacacttgctacac |
53467137 |
T |
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| Q |
101 |
aacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgcccccctcaaatggatgctttttatatatacttgcaccaccatactcaaca |
200 |
Q |
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| T |
53467136 |
aacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgccccc-tcaaattgatgctttttatatatacttgcaccaccatgctcaaca |
53467038 |
T |
|
| Q |
201 |
ggacatgttgtctcaccaccatgtcatgaagactttcaacataaggagcagatcgaaccctatacgttgaaccatcagctctgctaccatggttttgata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53467037 |
ggacatgttgtctcaccaccatgtcatgaagactttcaacataaggagcagatcgaaccctatacgttgaaccatcagctctgcgaccatggttttgata |
53466938 |
T |
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| Q |
301 |
aagatcatgtga |
312 |
Q |
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|||||||||||| |
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| T |
53466937 |
aagatcatgtga |
53466926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 45635976 - 45636047
Alignment:
| Q |
77 |
acttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtat |
148 |
Q |
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| T |
45635976 |
acttctatctcacacttggtacacaacaatctccctctcaagtgtgagtcatccatccattcatttgggtat |
45636047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 13154520 - 13154560
Alignment:
| Q |
77 |
acttctacctcacacttgctacacaacaatctccctctcaa |
117 |
Q |
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| T |
13154520 |
acttctaactcatacttgctacacaacaatcttcctctcaa |
13154560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 42730342 - 42730284
Alignment:
| Q |
70 |
atgttgaacttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcat |
128 |
Q |
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|||| ||||||||| |||| ||||||||||||||||||| || |||||||||| ||||| |
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| T |
42730342 |
atgtggaacttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcat |
42730284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 28483780 - 28483750
Alignment:
| Q |
77 |
acttctacctcacacttgctacacaacaatc |
107 |
Q |
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| T |
28483780 |
acttctacctcacacttgctacacaacaatc |
28483750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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