View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_31 (Length: 306)
Name: NF6727_low_31
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_31 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 51772699 - 51772966
Alignment:
| Q |
17 |
acatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgt |
116 |
Q |
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| T |
51772699 |
acatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgt |
51772798 |
T |
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| Q |
117 |
ctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatatcaaaagtccaccatatgtgcataatataaatagttgg |
216 |
Q |
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| T |
51772799 |
ctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatatcaaaagtccaccatatgtgcataatataaatagttgg |
51772898 |
T |
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| Q |
217 |
actggaatgaagcttcatgttgcgaggacaaacattataagacagaacttaaatgagatgataaatat |
284 |
Q |
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| T |
51772899 |
actggaatgaagcttcatgttgcgaggacaaacattataagactgaacttaaatgagatgataaatat |
51772966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 51804306 - 51804454
Alignment:
| Q |
19 |
atcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtct |
118 |
Q |
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| T |
51804306 |
atcaagtgtgtgaggcagagtcaaaatgttgagaagccaacacaaaagtacataaacatagtcacaatggacaattttgatttctggcttatgggtgtcc |
51804405 |
T |
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| Q |
119 |
ttaattatcataaaacattcaactatctcgagaaagcaatttctcaagc |
167 |
Q |
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| T |
51804406 |
taaaatatcagaaaactttcaaatatatcgagcaggcaatttctcaagc |
51804454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 51808255 - 51808401
Alignment:
| Q |
19 |
atcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtct |
118 |
Q |
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| T |
51808255 |
atcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaagatagttacagaagacggttttgatttctggcttatgggtgttc |
51808354 |
T |
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| Q |
119 |
ttaattatcataaaacattcaactatctcgagaaagcaatttctcaa |
165 |
Q |
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| T |
51808355 |
taaaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
51808401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 51780538 - 51780684
Alignment:
| Q |
20 |
tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctt |
119 |
Q |
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| T |
51780538 |
tcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtacataaatatagttacagtggataacttcgatttctggcttatgggtgtctt |
51780637 |
T |
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| Q |
120 |
taattatcataaaacattcaactatctcgagaaagcaatttctcaag |
166 |
Q |
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| T |
51780638 |
aaaatatcagaaaactttcaaatatctcgagcaggcaatttcacaag |
51780684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 51768085 - 51768127
Alignment:
| Q |
31 |
aatcaaagtcaaaatgttgagaagccaacacaaaagtacataa |
73 |
Q |
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| T |
51768085 |
aatcaaagtcaaaatgttgagaagccaacacaaaaggacataa |
51768127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 51768140 - 51768214
Alignment:
| Q |
105 |
gtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatat |
179 |
Q |
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| T |
51768140 |
gtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaatat |
51768214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 7182 - 7327
Alignment:
| Q |
20 |
tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctt |
119 |
Q |
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| T |
7182 |
tcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtacataaatatagttacagtggataacttcgatttctggcttatgggtgtctt |
7281 |
T |
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| Q |
120 |
taattatcataaaacattcaactatctcgagaaagcaatttctcaa |
165 |
Q |
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| T |
7282 |
aaaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
7327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 32908262 - 32908232
Alignment:
| Q |
19 |
atcaagtgtgtgaatcaaagtcaaaatgttg |
49 |
Q |
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| T |
32908262 |
atcaagtgtgtgaatcaaagtcaaaatgttg |
32908232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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