View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_34 (Length: 272)
Name: NF6727_low_34
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 51211631 - 51211846
Alignment:
| Q |
23 |
acaaggtatgaatgcagcatcatttgatctaaccatgataacaaaattcgaagataataataactcattcttccttttttggtggatatatatgttctgc |
122 |
Q |
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| T |
51211631 |
acaaggtatgaatgcagcatcatttgatctaaccatgataacaaaattcgaagataataataactcattcttccttttttggtggatat----gttctgc |
51211726 |
T |
|
| Q |
123 |
aggtaggaaaattcatacaatatgtgtcatgttttttaggaggtttagttgtggcattcatcttgggttggcttctaacccttgtccttctatcgtctat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51211727 |
aggtaggaaaattcatacaatatgtgtcatgttttttaggaggtttagttgtggcattcatcttgggttggcttttaacccttgtccttctatcgtctat |
51211826 |
T |
|
| Q |
223 |
tcctcttcttgtcctctctg |
242 |
Q |
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|
|||||||||||||||||||| |
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| T |
51211827 |
tcctcttcttgtcctctctg |
51211846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 49738446 - 49738326
Alignment:
| Q |
122 |
caggtaggaaaattcatacaatatgtgtcatgttttttaggaggtttagttgtggcattcatcttgggttggcttctaacccttgtccttctatcgtcta |
221 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||| |
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| T |
49738446 |
caggtaggaaaattcatacagtatgtgtcatcttttttaggaggtttagttgttgcattcatcaagggttggcttctaagccttgtccttctatcttctc |
49738347 |
T |
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| Q |
222 |
ttcctcttcttgtcctctctg |
242 |
Q |
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||||||||||||||||||||| |
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| T |
49738346 |
ttcctcttcttgtcctctctg |
49738326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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