View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_36 (Length: 263)
Name: NF6727_low_36
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 27431308 - 27431051
Alignment:
| Q |
1 |
ctaacttctatctatatgattttaatattgaaatgaataaaacagtgnnnnnnnnnnn---aacaaatcaaaatgagatatattgtaaactgcggtgaat |
97 |
Q |
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| T |
27431308 |
ctaacttctatctatatgattttaatattgaaatgaataaaacaatgtttgttttttttttaacaaatcaaaatgagatatattataaacagcagtgaat |
27431209 |
T |
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| Q |
98 |
cacctcacacatgaataaaacagtgttaatgctaaaaatatctgttttcatggtaaaagaaaatgataatattttttcttacctccttaatataaatata |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
27431208 |
cacctcacacatgaataaaacagtgttaatgctaaaaatatctgttttcatggtaaaataaaatgataatattttttcttacctccttaat------ata |
27431115 |
T |
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| Q |
198 |
agcatatataaactttctccaatcaaaattattttaacattggttttattcaatttttaaattt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||| |
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| T |
27431114 |
agcatatataaactttctccaatcaaaattattttagcaatggttttagtcactttttaaattt |
27431051 |
T |
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