View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6727_low_39 (Length: 251)

Name: NF6727_low_39
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6727_low_39
NF6727_low_39
[»] chr2 (7 HSPs)
chr2 (23-236)||(2326813-2327025)
chr2 (23-236)||(2330528-2330740)
chr2 (23-218)||(2350852-2351046)
chr2 (23-236)||(2303258-2303470)
chr2 (23-236)||(2320959-2321171)
chr2 (23-218)||(2293663-2293857)
chr2 (23-218)||(2309994-2310188)
[»] chr8 (1 HSPs)
chr8 (154-236)||(41126837-41126919)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 2327025 - 2326813
Alignment:
Q  23 tttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgc 122  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||    
T  2327025 tttcacttcctccttctctacaacaccatcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtccgggtacttcac-caaattcgc 2326927  T
Q  123 cataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttcc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2326926 cataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttccgtttttcc 2326827  T
Q  223 attggcaactccaa 236  Q
    ||||||||||||||    
T  2326826 attggcaactccaa 2326813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 2330740 - 2330528
Alignment:
Q  23 tttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgc 122  Q
    ||||||||||||||||| | || || |||| |||||||| |||||  ||||||||| ||||||| |||  |||||||||||||||||||  |||||| ||    
T  2330740 tttcacttcctccttctctccagcatcatcgccacccatcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttcac-caaattcgc 2330642  T
Q  123 cataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttcc 222  Q
    ||||||||| ||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||| ||||||||||||| |||| ||| |||| |||    
T  2330641 cataatccattgcaaagcggtggaagtagtatccgtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcactcaatttccgtttctcc 2330542  T
Q  223 attggcaactccaa 236  Q
       |||||||||||    
T  2330541 tgaggcaactccaa 2330528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 2351046 - 2350852
Alignment:
Q  23 tttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgc 122  Q
    |||||||||| |||||| | ||   ||||||| |||||| |||||||||||||| | ||||||||||| ||| ||||| ||||||||||  |||||||||    
T  2351046 tttcacttccaccttctctccatttccatcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcac-caaatttgc 2350948  T
Q  123 cataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgttt 218  Q
    ||||||||| |||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||| ||||    
T  2350947 cataatccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgttt 2350852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 2303470 - 2303258
Alignment:
Q  23 tttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgc 122  Q
    ||||||||||||||||| | ||    ||||||||||||| ||||||| |||||||| |||||||||||| || || || |||||||| || |||||| ||    
T  2303470 tttcacttcctccttctctccattctcatcaccacccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtactt-aaccaaattcgc 2303372  T
Q  123 cataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttcc 222  Q
    ||||||||| |||||||  |||||||||||||| || ||| |||||| |||||| ||||||||| |||||||||||| |||| |||||||  |||| |||    
T  2303371 cataatccattgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaacaaagattaaccatttcattctcactcaactttcgtttctcc 2303272  T
Q  223 attggcaactccaa 236  Q
       |||||||||||    
T  2303271 tcgggcaactccaa 2303258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 2321171 - 2320959
Alignment:
Q  23 tttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgc 122  Q
    ||||||||||||||||| | ||    |||||| | |||| ||||| | |||||||| |||||||||||  || || |||||||||||||  |||||| ||    
T  2321171 tttcacttcctccttctctccattgtcatcactaaccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcac-caaattcgc 2321073  T
Q  123 cataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttcc 222  Q
    ||||||||| |||||||| |||||||||||||| || ||| | ||||||||||||||||||||| |||||||||||| |||| |||||||  |||| |||    
T  2321072 cataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcc 2320973  T
Q  223 attggcaactccaa 236  Q
       |||||||||||    
T  2320972 tcgggcaactccaa 2320959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 2293857 - 2293663
Alignment:
Q  23 tttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgc 122  Q
    ||||||||||||||||| | ||    ||||||||||||| ||||||| |||||||| |||||||||||  || || || |||||||||| | | ||| ||    
T  2293857 tttcacttcctccttctctccattttcatcaccacccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcact-acattcgc 2293759  T
Q  123 cataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgttt 218  Q
    ||||||||| ||||||   ||||||||||| ||||| ||| | ||||||||||| ||||||||| |||||||||||| |||| ||| |||| ||||    
T  2293758 cataatccactgcaaactagtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgttt 2293663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 2310188 - 2309994
Alignment:
Q  23 tttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgc 122  Q
    ||||||||||||||||| | ||    ||||||||||||| ||||||| |||||||| |||||||||||  |  || || ||||||||||  || ||| ||    
T  2310188 tttcacttcctccttctctccattttcatcaccacccatcacctcccgaatctcctccacaagcctccccttcacttctgggtacttcac-cacattcgc 2310090  T
Q  123 cataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgttt 218  Q
    ||||||||| | ||||   ||||||||||| ||||| ||| | ||||||||||| ||||||||| |||||||||||| |||| ||| |||| ||||    
T  2310089 cataatccactccaaactagtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgttt 2309994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 41126919 - 41126837
Alignment:
Q  154 tctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaa 236  Q
    ||||| ||||||||||||||||| |||||||| || ||||||||||| ||| ||| |||  |||| |||   |||||||||||    
T  41126919 tctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcctcgggcaactccaa 41126837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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