View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_4 (Length: 732)
Name: NF6727_low_4
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 14 - 586
Target Start/End: Complemental strand, 29159193 - 29158621
Alignment:
| Q |
14 |
catcaacttccatagacctatgctcaacatctaacccaacttctcccagctgacccgtctcaccatttacctcaaaatgcccatttccttcagcacaacc |
113 |
Q |
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| T |
29159193 |
catcaacttccatagacctatgctcaacatctaacccaacttctcccagctgacccgtctcaccatttacctcaaaatgctcatttccttcagcacaacc |
29159094 |
T |
|
| Q |
114 |
ctgaacctccttaacttcttcacacacccccacattcaaatcaaatttacattcccgccgcaatatttcccctcccaaattcgcatccaaattcacaccc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29159093 |
ctgaacctccttaacttcttcacacacccccacattcaaatcaaatttacattcccgccgcaatatttcccctcccaaattcgcatccaaattcacaccc |
29158994 |
T |
|
| Q |
214 |
tcatcaccattcacatccaaattcaaatcaataccttctcttctctccaaaccaccctcgttatcaaaattcaaatcacacacatcatttaaatccatat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29158993 |
tcatcaccattcacatccaaattcaaatcaataccttctcttctctccaaaccaccctcgttatcaaaattcaaatcatacacatcatttaaatccatat |
29158894 |
T |
|
| Q |
314 |
cctcattcaaattaaccctagcattcaaatcaatatcatccttaacaccaatcccattatcattattatcaaaaacaccctcattctcattcaaattaac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29158893 |
cctcattcaaattaaccctagcattcaaatcaatatcatccttaacacaaatcccattatcattattatcaaaaacaccctcattcccattcaaattaac |
29158794 |
T |
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| Q |
414 |
cctagaattcaaatcaacgccatctttaacaaaaatcccattatcattcaaattaacactaccattcaaatcaacatcatttttaacacaaattccatta |
513 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
29158793 |
cctagaattcaaatcaacaccatctttaacaaaaatcccattatcattcaaattaacactaccattcaaatcaacatcatctttaacacaaattccataa |
29158694 |
T |
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| Q |
514 |
gcattaatatcagaaacacccccattcaaatttgaaatctcttcaaaaccaaaaagatttccactacctactt |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29158693 |
gcattaatatcagaaacacccccattcaaatttgaaatctcttcaaaaccaaacggatttccactacctactt |
29158621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 653 - 720
Target Start/End: Complemental strand, 29158554 - 29158487
Alignment:
| Q |
653 |
tattcaaaatcccgttaatttcactacccgccaccaaattatcactaccactacctgaacatgatgtc |
720 |
Q |
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| T |
29158554 |
tattcaaaatcccgttaatttcactacccgccaccaaattatcactaccactacctgaacatgatgtc |
29158487 |
T |
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