View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_40 (Length: 248)
Name: NF6727_low_40
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36941791 - 36941562
Alignment:
| Q |
1 |
taaaagcaagtaacatcatgttggattcagagtttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccac |
100 |
Q |
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| T |
36941791 |
taaaagcaagtaacatcatgttggattcagaatttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccac |
36941692 |
T |
|
| Q |
101 |
agctttagcagggactatgggatacatggctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgcttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941691 |
agctttagcagggactatgggatacatggctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgcttta |
36941592 |
T |
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| Q |
201 |
gagatagcttgtggaagaaaaccaataatt |
230 |
Q |
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| T |
36941591 |
gagatagcttgtggaagaaaaccaataatt |
36941562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 36939327 - 36939555
Alignment:
| Q |
1 |
taaaagcaagtaacatcatgttggattcagagtttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || |
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| T |
36939327 |
taaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaaggtttgtggaccatgcaaaaggtgcacaaactac |
36939426 |
T |
|
| Q |
101 |
agctttagcagggactatgggatacatggctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgcttta |
200 |
Q |
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| T |
36939427 |
agctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaaacagacgtgtatagttttggtattgttgcttta |
36939526 |
T |
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| Q |
201 |
gagatagcttgtggaagaaaaccaataat |
229 |
Q |
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| T |
36939527 |
gagatagcttgcggaagaaaacctataat |
36939555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 36949695 - 36949775
Alignment:
| Q |
140 |
tgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaa |
220 |
Q |
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|||||| | ||||| ||| |||| |||| | ||||| || ||||||||| |||||||||| || ||||||||||| ||||| |
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| T |
36949695 |
tgctacaagaggaaaggctagtagagaatctgatgtatacagttttggagttgttgctttggaaatagcttgtggtagaaa |
36949775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 36959829 - 36959909
Alignment:
| Q |
140 |
tgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaa |
220 |
Q |
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| T |
36959829 |
tgctacaagaggaaaggctagtagagaatctgatgtatacagttttggagttgttgctttggaaatagcttgtggtagaaa |
36959909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 3054491 - 3054432
Alignment:
| Q |
149 |
aggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagc |
208 |
Q |
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| T |
3054491 |
aggaagggctagtaaagaatctgacatgtatagttttggaattgttgctttggagctagc |
3054432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 28294281 - 28294221
Alignment:
| Q |
146 |
cacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagata |
206 |
Q |
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|||||| ||||| |||||||| | ||||||||||||||||| || |||||||| |||||| |
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| T |
28294281 |
cacaggtagggcaagtaaagagtcagatgtgtatagttttgggatagttgctttggagata |
28294221 |
T |
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