View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_43 (Length: 236)
Name: NF6727_low_43
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 31171101 - 31170887
Alignment:
| Q |
1 |
cacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggccaaagtcataaaagtttatttcttccttttccctccttaagat |
100 |
Q |
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| T |
31171101 |
cacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggccaaagtcataaaagtttatttcttccttttccctccttaagat |
31171002 |
T |
|
| Q |
101 |
ctctgttcgtaagataatttcataatgtcgtannnnnnncctttctgctcaatggctactaatttatgacaaacaattttgagcaaatatcacttgcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31171001 |
ctctgttcgtaagataatttcataatgtcgtattttttccctttctgctcgatggctactaatttatgacaaacaattttgagcaaatatcacttgcttt |
31170902 |
T |
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| Q |
201 |
ttaacttttcatact |
215 |
Q |
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||||||||||||||| |
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| T |
31170901 |
ttaacttttcatact |
31170887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35224481 - 35224424
Alignment:
| Q |
1 |
cacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggcc |
58 |
Q |
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|||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35224481 |
cacagctatcattactcgaagatgaaatgcgccgtatagaaagagtcaatgtaaggcc |
35224424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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