View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_46 (Length: 219)
Name: NF6727_low_46
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 8578346 - 8578490
Alignment:
| Q |
16 |
caatggtcacacgccaaaatcaaatcggaaactctggttccgaacttggcctcaatgatttcgctgatctatcctgggttgaactctctcaccttgggga |
115 |
Q |
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| T |
8578346 |
caatgatcacacaccataatcaaatcggaaattctggttccaaactcggcttcaatgattttgccgatctatcctgtgttgaactcgctcatcttgggga |
8578445 |
T |
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| Q |
116 |
cggacgtccatcaccgatggtgttagggtaaaataacttggtcta |
160 |
Q |
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| T |
8578446 |
aggacatccatcaccgatggtgttagggtacaataacttggtcta |
8578490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 8554205 - 8554128
Alignment:
| Q |
141 |
gggtaaaataacttggtctaatcacttggtccacattgtttcctcctttaatttcctaattggcattgttattttaat |
218 |
Q |
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| T |
8554205 |
gggtaaaataacttggtctaatcacttgttccacattgtttcctcctttaatttcataattggcattgttattttaat |
8554128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 8578496 - 8578536
Alignment:
| Q |
179 |
tttcctcctttaatttcctaattggcattgttattttaatc |
219 |
Q |
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| T |
8578496 |
ttttctcctttaattttataattggcattgttattttaatc |
8578536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 33443414 - 33443288
Alignment:
| Q |
20 |
ggtcacacgccaaaatcaaatcggaaactctggttccgaacttggcctcaatgatttcgctgatctatcctgggttgaactctctcaccttggggacgga |
119 |
Q |
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| T |
33443414 |
ggtcacccgacacaatcaaatcggaaattctggttctgaactcagcctcaatgatttcgctgatctatcctgggttgaacttgctcaacttagggaagga |
33443315 |
T |
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| Q |
120 |
cgtccatcaccgatggtgttagggtaa |
146 |
Q |
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| T |
33443314 |
cgtccatcaccaatgattttagggtaa |
33443288 |
T |
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