View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6727_low_48 (Length: 205)
Name: NF6727_low_48
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6727_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 7141153 - 7140997
Alignment:
| Q |
22 |
aaggcttccactttgttggactctcaaaagaacatccacaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttga |
121 |
Q |
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| T |
7141153 |
aaggctaccactttgttggactctcaaaagaacatccacaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttga |
7141054 |
T |
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| Q |
122 |
tgttttctcacaacattatctaagattttgtctacccttttgtgaattttctcaaca |
178 |
Q |
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| T |
7141053 |
tgttttctcacaacattatccaagattttgtctacccttttgtgaattttctcaaca |
7140997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 7152976 - 7152832
Alignment:
| Q |
30 |
cactttgttggactctcaaaagaacatccacaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttct |
129 |
Q |
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| T |
7152976 |
cactttgttggactcgcaaaagaacatctagaagatcttcgttatcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtct |
7152877 |
T |
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| Q |
130 |
cacaacattatctaagattttgtctacccttttgtgaattttctc |
174 |
Q |
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| T |
7152876 |
aataatgttttcaatgattttgtctacacgcttgtgaattttctc |
7152832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 7130799 - 7130752
Alignment:
| Q |
22 |
aaggcttccactttgttggactctcaaaagaacatccacaagatcttc |
69 |
Q |
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|||||||||||||| ||||| ||||||||| ||||| ||||||||||| |
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| T |
7130799 |
aaggcttccactttcttggattctcaaaagcacatcaacaagatcttc |
7130752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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