View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6727_low_6 (Length: 694)

Name: NF6727_low_6
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6727_low_6
NF6727_low_6
[»] chr1 (6 HSPs)
chr1 (1-657)||(9804675-9805330)
chr1 (49-481)||(9817777-9818211)
chr1 (8-330)||(9806473-9806792)
chr1 (542-685)||(9817550-9817693)
chr1 (539-678)||(9817438-9817577)
chr1 (549-657)||(9817341-9817448)
[»] scaffold0432 (3 HSPs)
scaffold0432 (8-478)||(11788-12264)
scaffold0432 (535-685)||(11558-11708)
scaffold0432 (539-657)||(11467-11585)
[»] chr7 (1 HSPs)
chr7 (327-481)||(42778749-42778900)
[»] chr8 (1 HSPs)
chr8 (15-106)||(2371052-2371144)


Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Complemental strand, 9805330 - 9804675
Alignment:
Q  1 acaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaatatgtacttgtat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9805330 acaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaatatgtacttgtat 9805231  T
Q  101 ttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaa 200  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  9805230 ttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaa 9805131  T
Q  201 gcaccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagtataagaaatccatctgtggataataaattaaaataaaatcca 300  Q
    ||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9805130 gcactggtgatgaggaggaagactcttccccaaaggtaagatggggaatttgaagagtataagaaatccatgtgtggataataaattaaaataaaatcca 9805031  T
Q  301 tgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatga 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||        ||||||    
T  9805030 tgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaaaaaa-atatga 9804932  T
Q  401 aaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaac 500  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9804931 aaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaac 9804832  T
Q  501 ggcgactggtcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcga 600  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  9804831 ggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggttggcaacagcga 9804732  T
Q  601 ttgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga 657  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9804731 ttgagggagaaaattgtgtttagggtttcaagagaatgagaaatgaggatgggagga 9804675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 49 - 481
Target Start/End: Complemental strand, 9818211 - 9817777
Alignment:
Q  49 aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt 146  Q
    |||||||||||||||||  || |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  9818211 aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt 9818112  T
Q  147 tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatgggg 246  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  9818111 tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaagactcttccccaaaggtaagatgggg 9818012  T
Q  247 aatttgaagagt--ataagaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaa 344  Q
    ||||||||||||  | ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  9818011 aatttgaagagtagaaaagaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcacataaaa 9817912  T
Q  345 gacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggt 444  Q
    ||||||||||||| ||||||||||||||||||||||| ||||        || || ||||||||| ||||||||||||||||||||||||| ||||||||    
T  9817911 gacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaacgaggt 9817814  T
Q  445 tgaagtttcatgaaaactccatcaaaagagataacca 481  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9817813 tgaagtttcatgaaaattccatcaaaagagataacca 9817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 9806473 - 9806792
Alignment:
Q  8 aagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaatatgtacttgtatttgtt 105  Q
    |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||  ||| ||||| | ||||||| |||||||||||||| ||||||    
T  9806473 aagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaatatgtacttgtgtttgtt 9806572  T
Q  106 atttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaag---- 201  Q
    |||| ||||||  ||||| |||||||||||| || |||||||||||||            ||||||||||||||| ||||||||||||||||| ||        
T  9806573 attttctatttgtttctaatacacattttatatttaatttttgtacac------------aagggaaaaggaattattgttgaacaaaatgaagaggagg 9806660  T
Q  202 -caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagt---ataagaaatccatctgtggataataaattaaaataaaat 297  Q
     ||| |  || ||| ||||||||| || ||| |||||||| |||||||||||||||||   ||||||| | ||| | |    |||||| |||||||||||    
T  9806661 ccactatagaagaggaggaagactatt-cccgaaagtaaggtggggaatttgaagagtagaataagaagttcatgtctacccaataaaataaaataaaat 9806759  T
Q  298 ccatgtatttattacatagtatgatgtttgaaa 330  Q
    |||||||||||||||||||||||||||||||||    
T  9806760 ccatgtatttattacatagtatgatgtttgaaa 9806792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 542 - 685
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
Q  542 ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga 641  Q
    ||||||||||||||||||||||||||  ||| || |||||||||||||| ||||||||  |||||| ||||||| ||||||||||||||||| |||||||    
T  9817693 ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga 9817594  T
Q  642 aatgaggatgggaggattattttgtttgattgatgtccatctca 685  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  9817593 aatgaggatgggaggattcttttgtttgattgatgtcgatctca 9817550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 678
Target Start/End: Complemental strand, 9817577 - 9817438
Alignment:
Q  539 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 638  Q
    ||||||| | |||| |||||||||||||   |||||| ||||||||||||||||| | |||  |||||||||||| ||||||||||||||||| ||||||    
T  9817577 ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg 9817478  T
Q  639 agaaatgaggatgggaggattattttgtttgattgatgtc 678  Q
    |||||||||||| |||||||| ||||| ||||| ||||||    
T  9817477 agaaatgaggattggaggattcttttgattgatcgatgtc 9817438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 549 - 657
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
Q  549 tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg 648  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||||  |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  9817448 tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg 9817350  T
Q  649 atgggagga 657  Q
    |||||||||    
T  9817349 atgggagga 9817341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 478
Target Start/End: Complemental strand, 12264 - 11788
Alignment:
Q  8 aagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta 106  Q
    ||||||||||||||| |||||||||  |||||||| ||||||| |||| ||||||||| || ||||| | ||||||| || ||||||||| | |||||||    
T  12264 aagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattcaattatgtacttatgtttgtta 12165  T
Q  107 tttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaag----- 201  Q
    |||  |||||||||||||||| |||||||| ||||||||| ||||||   |||||| | |||||| |||||||||||||||||||||||||||||         
T  12164 ttttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgttgaacaaaatgaaaaggatgc 12066  T
Q  202 caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagta---taagaaatccatctgtggataataaattaaaataaaatc 298  Q
    ||| |||||| |  ||||||||||||||| ||| ||||||||||||||||||||||||   ||||||||| || |||  |||||||| |||||||||||     
T  12065 cactagtgataacgaggaagactcttccctaaa-gtaagatggggaatttgaagagtagaataagaaatctatgtgtacataataaaataaaataaaatt 11967  T
Q  299 catgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatat 398  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| ||  ||||        || |    
T  11966 catgtatttattacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaattatatagataaaaca--atgt 11869  T
Q  399 g-aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa 478  Q
    | |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11868 gaaaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa 11788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 535 - 685
Target Start/End: Complemental strand, 11708 - 11558
Alignment:
Q  535 atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag 634  Q
    ||||||||||||||  |||||||| |||||||| ||||||| || |||||||||||| | |||   ||||| || |||| ||||||| | | ||||||||    
T  11708 atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag 11609  T
Q  635 aatgagaaatgaggatgggaggattattttgtttgattgatgtccatctca 685  Q
    |||| ||| |||||||||||||||| |||||||||||  ||||| ||||||    
T  11608 aatgggaagtgaggatgggaggattcttttgtttgatcaatgtcgatctca 11558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 539 - 657
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
Q  539 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 638  Q
    ||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || ||   ||||||||||| | ||| | || ||||| ||||||     
T  11585 ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata 11486  T
Q  639 agaaatgaggatgggagga 657  Q
    |||||||||||||||||||    
T  11485 agaaatgaggatgggagga 11467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 327 - 481
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
Q  327 gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc 426  Q
    ||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| ||||        || ||||||||||||||||||||||||||||     
T  42778749 gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct 42778846  T
Q  427 caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca 481  Q
    ||| | |||||||||||||||| || |||||||||||| ||||||||||||||||    
T  42778847 caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca 42778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
Q  15 aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta 106  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||| || ||||| ||| ||||| |||||| ||||| | |||||||    
T  2371144 aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta 2371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University