View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6727_low_7 (Length: 679)

Name: NF6727_low_7
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6727_low_7
NF6727_low_7
[»] chr2 (1 HSPs)
chr2 (11-629)||(29237250-29237879)


Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 629
Target Start/End: Original strand, 29237250 - 29237879
Alignment:
Q  11 tggacagcttcgatcggatacacttagaagcaggacttgcgactagaaagtgtcttgtttagaggcaagactcttgtgagaactgatcttttaatgaatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29237250 tggacagcttcgatcggatacacttagaagcaggacttgcgactagaaagtgtcttgtttagaggcaagactcttgtgagaactgatcttttaatgaatt 29237349  T
Q  111 tagactaatttaaaatatagttcagtatacttcaggaaaaattactgccttggaaaagtaccggaaatacttcagaaaaaattgaagtgaacctaacata 210  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29237350 tagactaatttaaaatatagttcagtatactttaggaaaaattactgccttggaaaagtaccggaaatacttcagaaaaaattgaagtgaacctaacata 29237449  T
Q  211 tctcgaaaaaacattatcaaaaactatatttgtagcttaaaccattgtgag--------aagagaaaatctccgataggnnnnnnnttgcagcttgctca 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||       ||||||||||||||    
T  29237450 tctcgaaaaaacattatcaaaaactatatttgtagcttaaaccattgtgagaataaccaaagagaaaatctccgataggaaaaaaattgcagcttgctca 29237549  T
Q  303 aagcacggcgaaattaacacatgtacattttaatataaacatgttgtgtactcgtaacttactatttatgaacatgctatgaatgcataataacaagttg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29237550 aagcacggcgaaattaacacatgtacattttaatataaacatgttgtgtactcgtaacttactatttatgaacatgctatgaatgcataataacaagttg 29237649  T
Q  403 tccagcattccagattggaaatttaaagctttggtca--nnnnnnnnggtcatttgatggcaaccttcagttcatccaaaataaaatgtacaaaaatcaa 500  Q
    ||||||||||||||||||||| |||||||||||||||          ||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  29237650 tccagcattccagattggaaaattaaagctttggtcatttttttttgggtcatttgatggcaacgttcagttcatccaaaataaaatgtgcaaaaatcaa 29237749  T
Q  501 cctacagtgttatctcaagtgttccaatagtcaatctattcagatcattccctaatgtagcaactagtt-ccccacagaccacagtgtttatataatcaa 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  29237750 cctacagtgttatctcaagtgttccaatagtcaatctattcagatcattccctaatgtagcaactagttcccccacagaccacagtttttacataatcaa 29237849  T
Q  600 tctacagtgttatctcctaacgttactttt 629  Q
     |||||| |||||| |||||||||||||||    
T  29237850 cctacagcgttatcccctaacgttactttt 29237879  T

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