View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6727_low_9 (Length: 523)

Name: NF6727_low_9
Description: NF6727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6727_low_9
NF6727_low_9
[»] chr1 (9 HSPs)
chr1 (208-505)||(34817496-34817793)
chr1 (96-141)||(28739402-28739447)
chr1 (4-73)||(34817785-34817849)
chr1 (96-141)||(50754748-50754793)
chr1 (96-142)||(9379841-9379887)
chr1 (96-142)||(9884864-9884910)
chr1 (96-137)||(15928163-15928204)
chr1 (96-143)||(6539648-6539695)
chr1 (104-142)||(4579191-4579229)
[»] chr2 (5 HSPs)
chr2 (96-142)||(12918556-12918602)
chr2 (96-142)||(39819086-39819132)
chr2 (96-141)||(7755360-7755405)
chr2 (98-142)||(30610247-30610291)
chr2 (96-137)||(15562232-15562273)
[»] chr5 (4 HSPs)
chr5 (96-142)||(29385374-29385420)
chr5 (96-142)||(1839994-1840040)
chr5 (103-142)||(19417468-19417507)
chr5 (170-204)||(9177967-9178001)
[»] chr7 (5 HSPs)
chr7 (96-141)||(7211884-7211929)
chr7 (96-141)||(17272723-17272768)
chr7 (100-141)||(29681789-29681830)
chr7 (11-40)||(30969799-30969828)
chr7 (96-136)||(7211987-7212027)
[»] chr6 (1 HSPs)
chr6 (100-141)||(2543836-2543877)
[»] chr3 (4 HSPs)
chr3 (96-141)||(11512411-11512456)
chr3 (96-142)||(20286927-20286973)
chr3 (96-141)||(31342031-31342076)
chr3 (101-137)||(20801112-20801148)
[»] chr4 (3 HSPs)
chr4 (96-142)||(31846880-31846926)
chr4 (96-140)||(31012152-31012196)
chr4 (163-204)||(33380737-33380778)
[»] chr8 (2 HSPs)
chr8 (96-139)||(43465112-43465155)
chr8 (163-200)||(16687519-16687556)
[»] scaffold0110 (1 HSPs)
scaffold0110 (171-208)||(26631-26668)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 208 - 505
Target Start/End: Complemental strand, 34817793 - 34817496
Alignment:
Q  208 gacatttaatatgagataggagatgaatgaaatattaaaatgacaacacattgtaaggtcgccgctttttattgaaataaaatctcaaccattaaacaag 307  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34817793 gacatttaatatgagataggagatgaatgaaatattaaaatggcaacacattgtaaggtcgccgctttttattgaaataaaatctcaaccattaaacaag 34817694  T
Q  308 aggccggtgaggttatgagctgtagcatgaacgtgtcacgagacaatttataaagtgttagttagttagttacactatgtatcagtacagtaatagtagt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34817693 aggccggtgaggttatgagctgtagcatgaacgtgtcacgagacaaaaaataaagtgttagttagttagttacactatggatcagtacagtaatagtagt 34817594  T
Q  408 gtatttagttattagcatgtggttgttggaagtttggcattttcaaccagttatttgtcccatttactgtctattcttcaacacaaacatgttgattc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34817593 gtatttagttattagcatgtggttgttggaagtttggcattttcaaccagttatttgtcccatttactgtctattcttcaacacaaacatgttgattc 34817496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 28739402 - 28739447
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 141  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  28739402 aaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaa 28739447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 34817849 - 34817785
Alignment:
Q  4 aatataataggtatatcataacaaatcatgagtttgtcggtgaaaatatcataaactatgtgacatttaa 73  Q
    |||||||||| ||||||||||||||||||||||| | ||     ||||||||||||||||||||||||||    
T  34817849 aatataatagatatatcataacaaatcatgagttcgccg-----aatatcataaactatgtgacatttaa 34817785  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 50754793 - 50754748
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 141  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  50754793 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 50754748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 9379887 - 9379841
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||    
T  9379887 aaagaagaaagccacatgtgacattgtggttggccaatatcaccaat 9379841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 9884910 - 9884864
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||    
T  9884910 aaagaagaaagccacatgtgacattgtggttgaccaatgtcaccaat 9884864  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 15928163 - 15928204
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtca 137  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  15928163 aaagaagaaagccacatgtgacattgtggttggccaatgtca 15928204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 6539648 - 6539695
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaata 143  Q
    |||||| |||| ||||||||||||||| |||| |||||||||||||||    
T  6539648 aaagaagaaagtcacatgtgacattgtggttgaccaatgtcaccaata 6539695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 4579229 - 4579191
Alignment:
Q  104 aagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  4579229 aagccacttgtgacattgtggttggccaatgtcaccaat 4579191  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 12918602 - 12918556
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  12918602 aaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaat 12918556  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 39819132 - 39819086
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||    
T  39819132 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaat 39819086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 7755405 - 7755360
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 141  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7755405 aaagaaaaaagccacttgtgacattgtggttggccaatgtcaccaa 7755360  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 30610247 - 30610291
Alignment:
Q  98 agaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||    
T  30610247 agaaaaaagtcacatgtgacattatggttggccaatgtcaccaat 30610291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 15562273 - 15562232
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtca 137  Q
    |||||| |||| ||||||||||||||| ||||||||||||||    
T  15562273 aaagaagaaagtcacatgtgacattgtggttggccaatgtca 15562232  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 29385374 - 29385420
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||    
T  29385374 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaat 29385420  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 1840040 - 1839994
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||    
T  1840040 aaagaagaaagccacatgtgacattgtggttggccaatgtcatcaat 1839994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 19417507 - 19417468
Alignment:
Q  103 aaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  19417507 aaagtcacatgtgacattgtagttgaccaatgtcaccaat 19417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 9177967 - 9178001
Alignment:
Q  170 ccaatatcaccaatcacaatgtcatccaagtgcta 204  Q
    ||||||||||||| |||||||||||||||||||||    
T  9177967 ccaatatcaccaaccacaatgtcatccaagtgcta 9178001  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 7211929 - 7211884
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 141  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  7211929 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 7211884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 17272768 - 17272723
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 141  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  17272768 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 17272723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 29681830 - 29681789
Alignment:
Q  100 aaaaaagccacatgtgacattgtagttggccaatgtcaccaa 141  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  29681830 aaaaaagccacatgtgacgttgtggttggccaatgtcaccaa 29681789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 30969828 - 30969799
Alignment:
Q  11 taggtatatcataacaaatcatgagtttgt 40  Q
    ||||||||||||||||||||||||||||||    
T  30969828 taggtatatcataacaaatcatgagtttgt 30969799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 7211987 - 7212027
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtc 136  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  7211987 aaagaagaaagtcacatgtgacattgtggttggccaatgtc 7212027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 2543836 - 2543877
Alignment:
Q  100 aaaaaagccacatgtgacattgtagttggccaatgtcaccaa 141  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  2543836 aaaaaagccacatgtgacattgtggttggccaatgtcaccaa 2543877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 11512456 - 11512411
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 141  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  11512456 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 11512411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 20286973 - 20286927
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||    
T  20286973 aaagaagaaagccacatgtgacattgtggttggccaatgtcatcaat 20286927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 31342076 - 31342031
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 141  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||||    
T  31342076 aaagaagaaagctacatgtgacattgtggttggccaatgtcaccaa 31342031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 20801112 - 20801148
Alignment:
Q  101 aaaaagccacatgtgacattgtagttggccaatgtca 137  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  20801112 aaaaagccacatgttacattgtagttgggcaatgtca 20801148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 31846880 - 31846926
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 142  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||    
T  31846880 aaagaagaaagccacatgtgacattgtggttggccaatatcaccaat 31846926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 31012196 - 31012152
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcacca 140  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||||    
T  31012196 aaagaaaaaagtcacatgtgacattgtggttggtcaatgtcacca 31012152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 33380737 - 33380778
Alignment:
Q  163 aatgttaccaatatcaccaatcacaatgtcatccaagtgcta 204  Q
    ||||| || ||||||||||| |||||||||||||||||||||    
T  33380737 aatgtcacaaatatcaccaaccacaatgtcatccaagtgcta 33380778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 43465155 - 43465112
Alignment:
Q  96 aaagaaaaaagccacatgtgacattgtagttggccaatgtcacc 139  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||    
T  43465155 aaagaagaaagccacatgtgatattgtggttggccaatgtcacc 43465112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 16687556 - 16687519
Alignment:
Q  163 aatgttaccaatatcaccaatcacaatgtcatccaagt 200  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  16687556 aatgtcaccaatatcaccaaccacaatgtcatccaagt 16687519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 26631 - 26668
Alignment:
Q  171 caatatcaccaatcacaatgtcatccaagtgctatccg 208  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  26631 caatatcaccaaccacaatgtcatccaagtgttatccg 26668  T

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