View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6728_low_1 (Length: 439)
Name: NF6728_low_1
Description: NF6728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6728_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 4179269 - 4178843
Alignment:
| Q |
1 |
aaatcgatgatgattctaagaacgatgaacaaaaggttccactcctgcggaatgcggaggttccagaagcagagaggagcctgatacagaaagctataag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4179269 |
aaatcgatgatgattctaagaacgatgaacaaaaggttccactcctgcggaatgcggaggttccagaagcagagaggagcctggtacagaaagctataag |
4179170 |
T |
|
| Q |
101 |
ttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaatttttacaaatgttggcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179169 |
ttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaatttttacaaatgttggcaac |
4179070 |
T |
|
| Q |
201 |
tgtgactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaagg |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179069 |
tgtgactctgtctgcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaagg |
4178970 |
T |
|
| Q |
301 |
ggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4178969 |
ggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtt |
4178870 |
T |
|
| Q |
401 |
tatagatttcatgcatgcaatgatgtc |
427 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
4178869 |
tatagatttcatgcatgcgatgatgtc |
4178843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 419
Target Start/End: Complemental strand, 4168339 - 4167924
Alignment:
| Q |
7 |
atgatgattctaagaac---gatgaacaaaaggttccactcctgcggaatgcggaggttccagaagcagagaggagcctgatacagaaagctataagttc |
103 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |||| ||||| ||||||||||||||| |||| | | ||||||| | ||||||||||| |
|
|
| T |
4168339 |
atgatgattctaagaacaaggatgaacacaaggttccactactgctaaatgcagaggttccagaagcaaagagaaacttgatacaaacagctataagttt |
4168240 |
T |
|
| Q |
104 |
gacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaatttttacaaatgttggcaactgt |
203 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||||||||||| || || || |||||||| |||||||| ||||||||| |||||| |||| |
|
|
| T |
4168239 |
gacatttcagagcacggcacatttagcaaaccttctacctacaggcactgtccttgcattacaacttttatcaccaatctttacaaatattggcagctgt |
4168140 |
T |
|
| Q |
204 |
gactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaagggga |
303 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||| ||||||| |||||| |||||| | |||||||||||||| | |
|
|
| T |
4168139 |
gactctgtcagcaagtggatgactgctgcacttgtgactctctgtggtgcatcatgctttctgctaagctttactgatagctttagagacagcaagggta |
4168040 |
T |
|
| Q |
304 |
atatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttat |
403 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
4168039 |
atattatttatgggtttgccacctttaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgctaaataccgcatacggtttat |
4167940 |
T |
|
| Q |
404 |
agatttcatgcatgca |
419 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
4167939 |
agattttatgcatgca |
4167924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 427
Target Start/End: Original strand, 34944370 - 34944554
Alignment:
| Q |
243 |
ctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtggg |
342 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||| || |||||| | | ||||| || ||||| || |||||||| |||||||| || || ||||| ||| |
|
|
| T |
34944370 |
ctatgtggtgcctcatgcttcctactatgcttcactgatagcttcaaagacaataaagggaacatatgttatggatttgccacatttaaaggcttatgga |
34944469 |
T |
|
| Q |
343 |
ttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtc |
427 |
Q |
| |
|
| |||||||||||| | | |||||||| | || ||| ||||||||||| ||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
34944470 |
tcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttcattgatttcatgcatgcaattatgtc |
34944554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 34947771 - 34947880
Alignment:
| Q |
312 |
tatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttca |
411 |
Q |
| |
|
||||| |||||||| || || ||||| ||| | |||||||||||| | | |||||||| | || ||| ||||||||||| ||| ||| || ||||||| |
|
|
| T |
34947771 |
tatggatttgccacatttaaaggcttatggatcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttgattgatttca |
34947870 |
T |
|
| Q |
412 |
tgcatgcaat |
421 |
Q |
| |
|
|||||||||| |
|
|
| T |
34947871 |
tgcatgcaat |
34947880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University