View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6728_low_3 (Length: 312)

Name: NF6728_low_3
Description: NF6728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6728_low_3
NF6728_low_3
[»] chr6 (2 HSPs)
chr6 (26-193)||(11444439-11444606)
chr6 (258-308)||(11444330-11444380)
[»] scaffold0591 (1 HSPs)
scaffold0591 (26-127)||(322-422)
[»] chr3 (1 HSPs)
chr3 (26-110)||(51485214-51485298)
[»] chr1 (4 HSPs)
chr1 (26-110)||(15123508-15123592)
chr1 (26-110)||(15147696-15147780)
chr1 (26-102)||(15115306-15115382)
chr1 (26-102)||(15139822-15139898)
[»] chr8 (1 HSPs)
chr8 (38-83)||(10551243-10551288)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 11444606 - 11444439
Alignment:
Q  26 accaccatcacgccacaaccaccatgagatctaccacgaaaactaatacaaacacccataaaaaccatccaaatctaccaccacgaaccaccatgagagc 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11444606 accaccatcacgccacaaccaccatgagatctaccacgaaaactaatacaaacacccataaaaaccatccaaatctaccaccgcgaaccaccatgagagc 11444507  T
Q  126 tgccaggaaaatcaatggcaacaatacgaaaaccacccaaatcagccaccacacttggaagagaatag 193  Q
    |||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11444506 tgccacaaaaatcaacgacaacaatacgaaaaccacccaaatcagccaccacacttggaagagaatag 11444439  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 11444380 - 11444330
Alignment:
Q  258 ggatatgccgccactacaagttccactggtggagccttggtatcaaccacc 308  Q
    |||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  11444380 ggatatgccggcaccacaagttccactggtggacccttggtatcaaccacc 11444330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 422 - 322
Alignment:
Q  26 accaccatcacgccacaaccaccatgagatctaccacgaaaactaatacaaacacccataaaaaccatccaaatctaccaccacgaaccaccatgagagc 125  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| || |||||||||||||||||||||| || |||||||  |||||||||||| |||||    
T  422 accaccatcacgccacaaccatcatgaaatctaccacgaaaaccaacacaaacacccataaaaaccatcgaactctacca-aacgaaccaccataagagc 324  T
Q  126 tg 127  Q
    ||    
T  323 tg 322  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 51485214 - 51485298
Alignment:
Q  26 accaccatcacgccacaaccaccatgagatctaccacgaaaactaatacaaacacccataaaaaccatccaaatctaccaccacg 110  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || | | ||||||||||||| || |||||||||||||||||    
T  51485214 accaccatcacaccacaaccaccatgaaatctaccacgaaaaccaacatacacacccataaaaatcagccaaatctaccaccacg 51485298  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 15123592 - 15123508
Alignment:
Q  26 accaccatcacgccacaaccaccatgagatctaccacgaaaactaatacaaacacccataaaaaccatccaaatctaccaccacg 110  Q
    ||||||||||| ||||||||| ||||| ||||| ||||||||| || | | ||||||||||||| || ||||||||| |||||||    
T  15123592 accaccatcacaccacaaccagcatgaaatctagcacgaaaaccaacatacacacccataaaaatcaaccaaatctatcaccacg 15123508  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 15147780 - 15147696
Alignment:
Q  26 accaccatcacgccacaaccaccatgagatctaccacgaaaactaatacaaacacccataaaaaccatccaaatctaccaccacg 110  Q
    ||||||||||| ||||||||| ||||| ||||| ||||||||| || | | ||||||||||||| || ||||||||| |||||||    
T  15147780 accaccatcacaccacaaccagcatgaaatctagcacgaaaaccaacatacacacccataaaaatcaaccaaatctatcaccacg 15147696  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 15115382 - 15115306
Alignment:
Q  26 accaccatcacgccacaaccaccatgagatctaccacgaaaactaatacaaacacccataaaaaccatccaaatcta 102  Q
    ||||||||||| ||||||||| ||||| ||||| || |||||| || | | ||||||||||||| |  |||||||||    
T  15115382 accaccatcacaccacaaccagcatgaaatctagcaagaaaaccaacatagacacccataaaaatctgccaaatcta 15115306  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 15139898 - 15139822
Alignment:
Q  26 accaccatcacgccacaaccaccatgagatctaccacgaaaactaatacaaacacccataaaaaccatccaaatcta 102  Q
    ||||||||||| ||||||||| ||||| ||||| || |||||| || | | ||||||||||||| |  |||||||||    
T  15139898 accaccatcacaccacaaccagcatgaaatctagcaagaaaaccaacatagacacccataaaaatctgccaaatcta 15139822  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 10551288 - 10551243
Alignment:
Q  38 ccacaaccaccatgagatctaccacgaaaactaatacaaacaccca 83  Q
    |||||||||||| |||||||||||||||||| || || ||||||||    
T  10551288 ccacaaccaccacgagatctaccacgaaaaccaacactaacaccca 10551243  T

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