View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6728_low_4 (Length: 239)
Name: NF6728_low_4
Description: NF6728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6728_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 53085292 - 53085513
Alignment:
| Q |
1 |
ttgtgacaatgagctttattttcgttcctcatatgaatgttt--acttatatataaaaataacaatttgcgacatattattgatacgtaatattagaaaa |
98 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53085292 |
ttgtggcaatgagctttattttcgttcctcatatgaatgtttttacttatatataaaaataacaatttgcaacatattattgatacgtaatattagaaaa |
53085391 |
T |
|
| Q |
99 |
agtttattatttttcaaactaaaataagaaaaagtttatttgtggcagtgagctttatttttgtttctcatatgaatggcttgagaaatttcttctctta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53085392 |
agtttattatttttcaaactaaaataagaaaaagtttatttgtggcagtgagctttatttttgtttctcatatgaatggcttgagaaatttcttctctta |
53085491 |
T |
|
| Q |
199 |
tcttttttcctctttcccgtgata |
222 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
53085492 |
tc--ttttcctctttcccgtgata |
53085513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 53085196 - 53085330
Alignment:
| Q |
40 |
tttacttatatataaaaataacaatttgcgacatatta----ttgatacgt-aatattagaaaaagtttattatttttcaaactaaaataagaaaaagtt |
134 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| ||| | ||||||| |||||||| ||||||||||| | ||||||| || ||||||| |
|
|
| T |
53085196 |
tttacttatatataaaaataacaatctgcaacatgttacatatcgatacgttaatattagtaaaagtttattttctttcaaa-------aaacaaaagtt |
53085288 |
T |
|
| Q |
135 |
tatttgtggcagtgagctttatttttgtttctcatatgaatg |
176 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
53085289 |
aatttgtggcaatgagctttattttcgttcctcatatgaatg |
53085330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University