View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6728_low_5 (Length: 224)

Name: NF6728_low_5
Description: NF6728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6728_low_5
NF6728_low_5
[»] chr8 (1 HSPs)
chr8 (20-176)||(18648523-18648679)
[»] chr7 (5 HSPs)
chr7 (20-176)||(15535067-15535224)
chr7 (20-125)||(15538541-15538647)
chr7 (172-224)||(62853-62905)
chr7 (173-224)||(23964287-23964338)
chr7 (179-224)||(3921463-3921508)
[»] chr5 (3 HSPs)
chr5 (20-176)||(17384697-17384853)
chr5 (20-124)||(17389413-17389518)
chr5 (20-148)||(31409561-31409690)
[»] scaffold0369 (1 HSPs)
scaffold0369 (20-124)||(13577-13681)
[»] chr2 (2 HSPs)
chr2 (20-124)||(31378278-31378383)
chr2 (165-224)||(40098069-40098128)
[»] chr4 (2 HSPs)
chr4 (172-224)||(35403890-35403942)
chr4 (178-224)||(10764906-10764952)
[»] chr3 (1 HSPs)
chr3 (178-224)||(41018723-41018769)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 18648523 - 18648679
Alignment:
Q  20 ctttctctatatatcagaattgtattttcacttttcaattcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttct 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18648523 ctttctctatatatcagaattgtatttccacttttcaattcaatgagaataatttccattcacatatttctgttcttctttatatgaattttacctttct 18648622  T
Q  120 taacatggtatcattcgctgtgtaaacgatctaagttttgcttccgttatttctcat 176  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  18648623 taacatggtatcattcgctgtgtaaacgatctaagtttcgcttccgttatttgtcat 18648679  T

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Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 15535067 - 15535224
Alignment:
Q  20 ctttctctatatatcagaattgtattttcacttttcaatt-caatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttc 118  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  15535067 ctttctctatatatcagaattgtatttccacttttcaatttcaatgagaataatttccattcacatatctctgttcttctttatatgaattttacctttc 15535166  T
Q  119 ttaacatggtatcattcgctgtgtaaacgatctaagttttgcttccgttatttctcat 176  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  15535167 ttaacatggtatcattcgttgtgtaaacgatctaagtttcgcttccgttatttgtcat 15535224  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 15538541 - 15538647
Alignment:
Q  20 ctttctctatatatcagaattgtattttcacttttcaatt-caatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttc 118  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  15538541 ctttctctatatatcagaattgtatttccacttttcaatttcaatgagaataatttccattcacatatctctgttcttctttatatgaattttacctttc 15538640  T
Q  119 ttaacat 125  Q
    |||||||    
T  15538641 ttaacat 15538647  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 62905 - 62853
Alignment:
Q  172 ctcattagttcatttgcataatcccataatagaccatactgctccctttcact 224  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  62905 ctcattagttcatttgcataatcccataatataccatactgctccctttcact 62853  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 23964338 - 23964287
Alignment:
Q  173 tcattagttcatttgcataatcccataatagaccatactgctccctttcact 224  Q
    |||| |||||||||||||||||||| || ||||||||||||||| |||||||    
T  23964338 tcatcagttcatttgcataatcccacaaaagaccatactgctccatttcact 23964287  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 3921463 - 3921508
Alignment:
Q  179 gttcatttgcataatcccataatagaccatactgctccctttcact 224  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||    
T  3921463 gttcattcgcataatcccacaaaagaccatattgctccctttcact 3921508  T

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Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 17384697 - 17384853
Alignment:
Q  20 ctttctctatatatcagaattgtattttcacttttcaat-tcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttc 118  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17384697 ctttctctatatattagaattgtatttccacttttcaatctcaatgagaataatttccattcacatatttctgttcttctttatatgaattttacctttc 17384796  T
Q  119 ttaacatggtatcattcgctgtgtaaacgatctaagttttgcttccgttatttctcat 176  Q
    ||||||||||||||   |||||||||||||||||||||| ||||||||||||| ||||    
T  17384797 ttaacatggtatca-gagctgtgtaaacgatctaagtttcgcttccgttatttgtcat 17384853  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 17389413 - 17389518
Alignment:
Q  20 ctttctctatatatcagaattgtattttcacttttcaat-tcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttc 118  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17389413 ctttctctatatatcagaattgtatttccacttttcaatctcaatgagaataatttccattcacatatttctgttcttctttatatgaattttacctttc 17389512  T
Q  119 ttaaca 124  Q
    ||||||    
T  17389513 ttaaca 17389518  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 31409561 - 31409690
Alignment:
Q  20 ctttctctatatatcagaattgtattttcacttttcaattcaatgagaataatttccattcacata-tttatgttcttctttatatgaattttacctttc 118  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||| | |     
T  31409561 ctttctctataaatcagaattgtattaccacttttcaattcaatgagaataattttcattcacatatttttttttcttctttatatgaattttacttctt 31409660  T
Q  119 ttaacatggtatcattcgctgtgtaaacga 148  Q
    |||||||||||||||||| || ||||||||    
T  31409661 ttaacatggtatcattcgatgcgtaaacga 31409690  T

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Target: scaffold0369 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 13681 - 13577
Alignment:
Q  20 ctttctctatatatcagaattgtattttcacttttcaattcaatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttct 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13681 ctttctctatatatcagaattgtatttccacttttcaattcaatgagaataatttccattcacatatttctgttcttctttatatgaattttacctttct 13582  T
Q  120 taaca 124  Q
    |||||    
T  13581 taaca 13577  T

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Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 31378383 - 31378278
Alignment:
Q  20 ctttctctatatatcagaattgtattttcacttttcaatt-caatgagaataatttccattcacatatttatgttcttctttatatgaattttacctttc 118  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  31378383 ctttctctatatataagaattgtatttccacttttcaatttcaatgagaataatttccattcacatatttctattcttctttatatgaattttacctttc 31378284  T
Q  119 ttaaca 124  Q
    ||||||    
T  31378283 ttaaca 31378278  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 40098128 - 40098069
Alignment:
Q  165 gttatttctcattagttcatttgcataatcccataatagaccatactgctccctttcact 224  Q
    |||| ||||||| | |||||||||||||||||| || |||||||||||||||||||||||    
T  40098128 gttacttctcatcatttcatttgcataatcccacaaaagaccatactgctccctttcact 40098069  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 35403890 - 35403942
Alignment:
Q  172 ctcattagttcatttgcataatcccataatagaccatactgctccctttcact 224  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  35403890 ctcattagttcatttgcataatctcataatagaccataatgctccctttcact 35403942  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 10764952 - 10764906
Alignment:
Q  178 agttcatttgcataatcccataatagaccatactgctccctttcact 224  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||    
T  10764952 agttcatttgcataatcccacaaaagaccatattgctccctttcact 10764906  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 41018723 - 41018769
Alignment:
Q  178 agttcatttgcataatcccataatagaccatactgctccctttcact 224  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||    
T  41018723 agttcatttgcataatcccacaaaagaccatattgctccctttcact 41018769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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