View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6729_high_11 (Length: 366)

Name: NF6729_high_11
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6729_high_11
NF6729_high_11
[»] chr5 (1 HSPs)
chr5 (142-244)||(5537581-5537683)
[»] chr8 (2 HSPs)
chr8 (4-78)||(24860252-24860326)
chr8 (11-78)||(24858944-24859010)
[»] chr6 (2 HSPs)
chr6 (4-78)||(20487287-20487361)
chr6 (4-78)||(20481642-20481716)
[»] chr3 (4 HSPs)
chr3 (4-78)||(21966568-21966642)
chr3 (4-78)||(21989004-21989078)
chr3 (4-78)||(21967066-21967140)
chr3 (4-78)||(21989502-21989576)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 5537683 - 5537581
Alignment:
Q  142 ctagttgggctaattattatttgatattttttaagagaattatttattcaagttaacgataaatataataaacaagtatataatattagtcaaacaacct 241  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5537683 ctagttggcctaattattatttgatattttttaagagaattatttatttaagttaacgataaatataataaacaagtatataatattagtcaaacaacct 5537584  T
Q  242 ctc 244  Q
    |||    
T  5537583 ctc 5537581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 24860252 - 24860326
Alignment:
Q  4 aatgagactaaaaataattaagggatcaaaacgaattttggtaattatttaaggaaccaaatatataattaagcc 78  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||    
T  24860252 aatgagtctaaaaataattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 24860326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 24859010 - 24858944
Alignment:
Q  11 ctaaaaataattaagggatcaaaacgaattttggtaattatttaaggaaccaaatatataattaagcc 78  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||  | | |||||||||||||||    
T  24859010 ctaaaaataattaagggaccaaaacgaattttgataattatttaagg-cctagatatataattaagcc 24858944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 20487287 - 20487361
Alignment:
Q  4 aatgagactaaaaataattaagggatcaaaacgaattttggtaattatttaaggaaccaaatatataattaagcc 78  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||    
T  20487287 aatgagactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 20487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 20481716 - 20481642
Alignment:
Q  4 aatgagactaaaaataattaagggatcaaaacgaattttggtaattatttaaggaaccaaatatataattaagcc 78  Q
    ||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  20481716 aatgagactaaaattaaataagggaccaaaccgaattttggtaattatttaagggaccagatatataattaagcc 20481642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 21966642 - 21966568
Alignment:
Q  4 aatgagactaaaaataattaagggatcaaaacgaattttggtaattatttaaggaaccaaatatataattaagcc 78  Q
    ||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21966642 aatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcc 21966568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 21989078 - 21989004
Alignment:
Q  4 aatgagactaaaaataattaagggatcaaaacgaattttggtaattatttaaggaaccaaatatataattaagcc 78  Q
    ||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21989078 aatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcc 21989004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 21967066 - 21967140
Alignment:
Q  4 aatgagactaaaaataattaagggatcaaaacgaattttggtaattatttaaggaaccaaatatataattaagcc 78  Q
    ||||| ||| ||| ||||||||||| ||||| |||| ||||||||||||| ||| |||| |||||||||||||||    
T  21967066 aatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcc 21967140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 21989502 - 21989576
Alignment:
Q  4 aatgagactaaaaataattaagggatcaaaacgaattttggtaattatttaaggaaccaaatatataattaagcc 78  Q
    ||||| ||| ||| ||||||||||| ||||| |||| ||||||||||||| ||| |||| |||||||||||||||    
T  21989502 aatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcc 21989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University