View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6729_high_16 (Length: 283)
Name: NF6729_high_16
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 13592172 - 13591949
Alignment:
| Q |
10 |
tatttaatggaaaaatatactttagtcatgactgatgatctataatcttaccaaaagtatttaatggaaaaatatatgtggtcacaaacatcaaaaggcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13592172 |
tatttaatggaaaaatatactttagtcatgactgatgatctataatcttaccaaaagtatttaatggaaaaatatatgtggtcacaaacatcaaaaggct |
13592073 |
T |
|
| Q |
110 |
atatagctaaagtggttttagttaaaagaacgaaagagttaaaggtataacaaacagctatatattttccacg----actaactaacggtgttggtcgat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||| |
|
|
| T |
13592072 |
atatagctaaagtggttttagttaaaagaacgaaagagttaaaggtataacaaacacctatatattttccacgattaattaactaacggtgttggt-gat |
13591974 |
T |
|
| Q |
206 |
ataatacctaaccgaagtttatacc |
230 |
Q |
| |
|
||||| ||||||| ||||||||||| |
|
|
| T |
13591973 |
ataatgcctaacctaagtttatacc |
13591949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University